BAC Information

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BAC

Clone NameMSMg01-355L08
Chromosome7 (Build37)
Map Location 144,288,675 - 144,289,073
singlet/doubletsinglet
Overlap geneMgmt
Upstream geneLOC546009, EG621677, EG668771
Downstream geneEG621804, Ebf3, 9430038I01Rik, Txnl2, LOC435235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355L08.T7 (MSMg01no355_l08.b1)MSMg01-355L08.TJ (MSMg01no355_l08.g1)
ACCAG466031AG466032
length766859
length of high quality
(start - end)		611 (42 - 652)246 (73 - 318)
definitionCHROMAT_FILE: MSMg01no355_l08.b1 PHD_FILE: MSMg01no355_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:14 2005CHROMAT_FILE: MSMg01no355_l08.g1 PHD_FILE: MSMg01no355_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTTATTTATTATTTTCAAAATTCTTTAGGATATTTTATATATCATATA
GCTTAAAAACAAACACAGCTACATTTAATAATTTCTGATATATACTCCTT
TTATTTCAGTTTTATATAGTATTATTTCTCTTATATTTTTGGTGTGTGTG
CATGCTCATTCATGTATAACTGTGTCCAGGTGGGTACAGATATATGTTCA
TGTACATAGGTCAGAGGTCAACTTAGGATATCATCCTCAATTATGCTCCA
CCATAGGTTTTGAGAAAGTCTTTCAGTGAAGCTGGAGTTCACTGATTGGC
TAGATTGGCTAGCCAGAAGGCCCCAAGGATCTTCCCGTCTCTGCCTCTCT
AGTTCTGGGATGATAAATATCTACACTGGCTTCTGACAGCTGAGCAAGAG
CAGGCAATCATGTCCTCATGCTTGTGTAGCCAAGAATTTACCAACTGAGC
TGTCTCCTCAGCTTTCCTTTCTTTTAAAGTATCTATGTCTTATAGAAAAT
AATTAACAGAGTCTGGCTTTTTTTTTTTTAAAGACAAGTCTTTTCATCTA
TGCCATTTTACTTGAATCTTAAGAACATTTACATTTAATGTAATTATTGA
TGTGGTTGGATTAGAATCTTCCAGCTCAATATTTCTCCCATCTACTCTTC
CTTTTCCTTGGTTTTCTTTTAGATTTGTTTTAAAAAAAACTTTTTCATTT
TGAACCCTTTGCCCTG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGACCTGTATTTTGTCATTGACTTTTT
CAGCATTTAATAAGATGATCAAGTGACCTTTTTCCTTGAGTTTGTTTACA
TAGTGTATTATGTTGATGGATTTTTGTATATTGAACCATCCCTGCATTCC
TGGGATGAAGCCTACATGATCTTGGTGAATGGTGGTTTTGGTGTGTTCTT
GGATTCAGTTTGTGAGGATTTAATTGAGTACTTTTGCATCAATATTCATA
GTGAGATTGGTCTGAAGTTCTTTCTGTGGTTTAGGTGTCATCAGTAACTG
TGGCTTCATATAATGAATTACCTAGTGTTCCTTCTGCTCCCATCTCGCGG
AATAGTCTGCACAGCTCCGCTATTATCCCTTCTTTTCTGATCCTCTTGTT
TTCACTCCCCCTTTTCTTTTTTTTCTCCGCTCCCCGATATATTTTTTTTG
TCCCCTCCCATCCTTCTTTTCTTTTTTCTTTTCTCTCACTTTTCCCCCCG
CCCACTATTCCTCCCTTTCTCTTTTATATACGCTTTTCTCTCTCCTTATT
ATTATTTTATCTTCTCTCCTACTCTCCTTCTTACTATCATTCTTATTTTC
TTCTCTTCTTTATCCCCTTTTCTCTCCTCATTTCCCTCTCTGCTTGTTAC
CCTTTCCTTTCGCTCCCCTCCTTCTCCTTTCTTTACTTCCCTTTTTTCCC
ATCCCCTCCCTTTCATTCCTTCTTCCCCCTCACATCTCTTCTTTACCTTA
TACTTATATTCCACATCCCTTCCTTTTCTATTTCCAATCTCTCTTTCCTT
TTATTACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_l08.b1 MSMg01no355_l08.b1 CHROMAT_FILE:
MSMg01no355_l08.b1 PHD_FILE: MSMg01no355_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:14 2005
         (611 letters)



>mm_chr7_144288675_144289685
          Length = 1011

 Score =  741 bits (383), Expect = 0.0
 Identities = 395/399 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttatttattattttcaaaattctttaggatattttatatatcatatagctta 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gaattcacttatttaatattttcaaaattctttaggatattttatatatcatatagctta 340

                                                                       
Query: 65  aaaacaaacacagctacatttaataatttctgatatatactccttttatttcagttttat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaaacaaacacagctacatttaataatttctgatatatactccttttatttcagttttat 280

                                                                       
Query: 125 atagtattatttctcttatatttttggtgtgtgtgcatgctcattcatgtataactgtgt 184
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atagtactatttctcttatatttttggtgtgtgtgcatgctcattcatgtataactgtgt 220

                                                                       
Query: 185 ccaggtgggtacagatatatgttcatgtacataggtcagaggtcaacttaggatatcatc 244
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ccaggtgggtacagatatatgctcatgtacataggtcagaggtcaacttaggatatcatc 160

                                                                       
Query: 245 ctcaattatgctccaccataggttttgagaaagtctttcagtgaagctggagttcactga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ctcaattatgctccaccataggttttgagaaagtctttcagtgaagctggagttcactga 100

                                                                       
Query: 305 ttggctagattggctagccagaaggccccaaggatcttcccgtctctgcctctctagttc 364
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 99  ttggctagattggctagccagaaggccccaaggatcttcctgtctctgcctctctagttc 40

                                                  
Query: 365 tgggatgataaatatctacactggcttctgacagctgag 403
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  tgggatgataaatatctacactggcttctgacagctgag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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