BAC Information

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BAC

Clone NameMSMg01-355L11
Chromosome7 (Build37)
Map Location 148,365,900 - 148,366,115
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015
Downstream geneHras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355L11.T7 (MSMg01no355_l11.b1)MSMg01-355L11.TJ (MSMg01no355_l11.g1)
ACCAG466037AG466038
length759807
length of high quality
(start - end)		282 (69 - 350)210 (72 - 281)
definitionCHROMAT_FILE: MSMg01no355_l11.b1 PHD_FILE: MSMg01no355_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:14 2005CHROMAT_FILE: MSMg01no355_l11.g1 PHD_FILE: MSMg01no355_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTGTACACCATGCTGGCCTCAAACTCAGAAATCTGCCTGCCTC
TGCCTCCCGAGTGCTGGAATTAAAGGCGTGCGCCACCACCGCCCAGCTTT
GCCTCAATTATTTTTTTTTTTTTTTTTTTTTTGGGTTTTCGAGACAGGGT
TTCTCTGTATAGCCCTAGCTGTCCTGGAACTCTCTTTGTAGACCAGGCTG
GCCTCGAACTCAGAAATCCACCTGCCTCTGCGGGCTTTGCCTCAATTTTT
AACTAGGAAGTTTTCAATGATCTTTGGTGGGGAGTGTGATTTGGAAGAGA
ATAGCTACTGTTGGCGTGTGCATCTCAATGCTTGGCATCTAGTTCCCCCC
GAACTGTTTTGGAATGGATTATGATATGTGGCCTCCTTAAAAGATGCGTG
TCATTTATGTGGCTTTTGGGGTTTCCTAAGCCTATATTTATGTTTGACCT
AACTTTCTCCCTCCCATGTGTTCATTTATGTTTTATTCCCAATTTCCGTG
TTCGGTTTTCTTCCTTTTTTCTTTCTTTCTGTCTGTTCTCCTATTTTTTT
ATATTATCTTCCTTCTTCTCGTTCTTGCTTAATTCCCCTCTCCTTCTTCT
TTTTTCTCCTTTTTCCTCCTTTCCCTCCCCTTTATTTTTCCCCCCTTTTA
TTTCCTCTCATCCTTTTCTTATTTCCCCTCTTCCTTTTCTCCTCTCTCTA
TTTTTTTTT

CGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTACATAGCCCAGGTTGGCCTGTACTCC
CAAATGCTGGGAAGGAACAAGTGTGTGCTGTCATGCTCAGCTCTTTCAAG
ATTGAGACTGTCAGCCAACTACGGAAGATCTGACGTGTTGGGGAGGTGAA
TTATAAAAAGATTTTATTTATTTATTGTTTGTTTGTTTGTTTGTTTGTTT
GACTGTTTGTCTGCATGTATATATTTGTACCAAATGTACGCTTGGTCCCC
ACAGAGGCCAGATTATTTTGCCAGATCCCATGGAACTGGAGTTAGGTGCA
TCTGTGAACCATCATGTGAGTTCTAGTAAGTGAACTTTTGTCCAGAGAAG
TAGTATGTGCTCTTTTGTTTGTTCGCCTGTTTGCTCTCCCTTCCTCATTA
ACTCTATTTCTTTTTTCTTCCTTCTCCCCTCTTCTCTTCCCTTTTTTGCA
CTTTTTCCTTTCCCCTCCCTTTACTTCTTTTTTCTCATTTTTTCTTCTAC
TCTTTTTTTTTCGCCTTTTCTCTTATCTTTTTTTCTCCTTTTCCCGTCTT
TTTTACCTTTTTTTTTCCTCCCCCCCTTTTTTCTCTGATCTTTCCCTTCC
ACTCTTTTTCTTCTACTCCTTTATTTCCGTCTTTCTTCTCCCCCTCACCC
CAATTCTCTCCTCTTATCTCTCTCTATCCACCTTTTTTCTCCACCGCCCC
TTTCTTATCCTTTCTTTATTCTTCTCTTTCCCAATACATCTCTCCCCTCT
CGTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_l11.g1 MSMg01no355_l11.g1 CHROMAT_FILE:
MSMg01no355_l11.g1 PHD_FILE: MSMg01no355_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:14 2005
         (210 letters)



>mm_chr7_148365774_148366384
          Length = 611

 Score =  354 bits (183), Expect = e-102
 Identities = 207/217 (95%), Gaps = 8/217 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   actacatagcccaggttggcc-tgtactcccaaatgctgggaaggaacaagtgtgtgctg 59
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 342 actacatagcccaggttggccttgtactcccaaatgctgggaaggaacaagtgtgtgctg 283

                                                                       
Query: 60  tcatgctcagctctttcaagattgagactgtcagccaactacggaagatctgacgtgttg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tcatgctcagctctttcaagattgagactgtcagccaactacggaagatctgacgtgttg 223

                                                                       
Query: 120 gggaggtgaattataaaaagattttatt----tatttattgt-ttgtttgtttgtttgtt 174
           ||||||||||||||||||||||||||||    |||||||| | |||||||||||||||||
Sbjct: 222 gggaggtgaattataaaaagattttattcatttatttatt-tattgtttgtttgtttgtt 164

                                                
Query: 175 tgtt-tgactgtttgtctgcatgtatatatttgtacc 210
           || | ||||||||||||||||||| ||||||||||||
Sbjct: 163 tgatatgactgtttgtctgcatgtgtatatttgtacc 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 611
Length adjustment: 9
Effective length of query: 201
Effective length of database: 602
Effective search space:   121002
Effective search space used:   121002
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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