Query= MSMg01no355_o14.b1 MSMg01no355_o14.b1 CHROMAT_FILE:
MSMg01no355_o14.b1 PHD_FILE: MSMg01no355_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:29 2005
(580 letters)
>mm_chr7_122724455_122725434
Length = 980
Score = 1067 bits (552), Expect = 0.0
Identities = 571/580 (98%), Gaps = 6/580 (1%)
Strand = Plus / Minus
Query: 4 ggaattcttcttg---ttccgtctcttcattattacattcagcgttcagtgtggaaaagt 60
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ggaattcttcttgcaat---gtctcttcattattacattcagcgttcagtgtggaaaagt 724
Query: 61 tcatgcaaaacagcatgattattataaatgtcaaaaatgtgtgggggagcagcctattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tcatgcaaaacagcatgattattataaatgtcaaaaatgtgtgggggagcagcctattaa 664
Query: 121 aatatagcctagagatagtatataacactgactttaaataagtagctggagccagcatgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aatatagcctagagatagtatataacactgactttaaataagtagctggagccagcatgc 604
Query: 181 tactacattaaatcactgatattgtgtgattcacccacaaatattaatttttagttcact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tactacattaaatcactgatattgtgtgattcacccacaaatattaatttttagttcact 544
Query: 241 taccacaattccaatatgtccttcatcctttcctcttggctgtatgggtatctggccatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 taccacaattccaatatgtccttcatcctttcctcttggctgtatgggtatctggccatg 484
Query: 301 tctgtgttctcaggtcacaggaggtgtttcaacacaggtaggtattggcttgggcttgaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cctgtgttctcaggtcacaggaggtgtttcaacacaggtaggtattggcttgggcttgaa 424
Query: 361 gcgccttactgtaaagcataaagaatactcccagtttttcagtgcaggcagcccatgcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gcgccttactgtaaagcataaagaatactcccagtttttcagtgcaggcagcccatgcag 364
Query: 421 aatgtgaagtaattgcattgtcatcaccaaaatgcttcaatcagtgccttgtgtgagtga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aatgtgaagtaattgcattgtcatcaccaaaatgcttcaatcagtgccttgtgtgagtga 304
Query: 481 ctgtctaccaggtttcactatagtaccagtggttaaaccaagacccaaacttcccccatc 540
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 303 ctgtccaccaggtttcactatagtaccagtggttaaaccaagacccaaacttcccccacc 244
Query: 541 agtagggtaccagcattttagggtaccaacaggtaagatt 580
||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agtagggtaccagcattttagggtaccaacaggtaagatt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_o14.g1 MSMg01no355_o14.g1 CHROMAT_FILE:
MSMg01no355_o14.g1 PHD_FILE: MSMg01no355_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:29 2005
(540 letters)
>mm_chr7_122666717_122667656
Length = 940
Score = 1021 bits (528), Expect = 0.0
Identities = 537/540 (99%)
Strand = Plus / Plus
Query: 1 aattatgtttctctgggtcttagtgctgactgacatcctggagcagaacactttctgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattatgtttctctgggtcttagtgctgactgacatcctggagcagaacactttctgttt 260
Query: 61 tgttcatatggttttaatatggttttaaccaattgcaaggttatttataagtttgcaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttcatatggttttaatatggttttaaccaattgcaaggttatttataagtttgcaact 320
Query: 121 cccaagtagacttataaagcacccagatttaagcagatccagttgtgtggtagacagagt 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaagtagacttataaagcacccaaatttaagcagatccagttgtgtggtagacagagt 380
Query: 181 cctgcttatatgtggtttcaactttttattcctgcacagaggcatgtggcagatttgttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgcttatatgtggtttcaactttttattcctgcacagaggcatgtggcagatttgttc 440
Query: 241 ctgattattctctgattatttggtaacaagttcacaaaaggttccattgtaaaattacag 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaatattctctgattatttggtaacaagttcacaaaaggttccattgtaaaattacag 500
Query: 301 aagctcctttgaaagctaacacatgatttaaaaacagggaattctatctcacttaagcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagctcctttgaaagctaacacatgatttaaaaacagggaattctatctcacttaagcca 560
Query: 361 ctagtaagactctgtcagtctgacattcccagtatgagcaaaggacatcaaaacaaaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctagtaagactctgtcagtctgacattcccagtatgagcaaaggacatcaaaacaaaact 620
Query: 421 gatggccagctagcaaatgtctttgtccaaaacggtatcttgggaattgtacaaatttga 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 gatggccagctagcaaatgtctttgtccaaaatggtatcttgggaattgtacaaatttga 680
Query: 481 gttcagatatctatgcaatttgcagtgtatattgctcaacattattttcggtaacatggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttcagatatctatgcaatttgcagtgtatattgctcaacattattttcggtaacatggg 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
