Query= MSMg01no356_p23.b1 MSMg01no356_p23.b1 CHROMAT_FILE:
MSMg01no356_p23.b1 PHD_FILE: MSMg01no356_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:53 2005
(449 letters)
>mm_chr7_104842730_104843577
Length = 848
Score = 832 bits (430), Expect = 0.0
Identities = 444/449 (98%), Gaps = 1/449 (0%)
Strand = Plus / Plus
Query: 1 cagaaagctgacacaacaggagagaacacccctcacacttcggttctctgattttctatt 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 cagaaagctgacacaacaggagagaacaccc-tcacacttcggttctctgattttctatt 259
Query: 61 acaagcctgttttgtctgttctttaacattttattttctagtgggatacctgtcgttgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acaagcctgttttgtctgttctttaacattttattttctagtgggatacctgtcgttgta 319
Query: 121 ctatgacctctccaaacaaatcattttattctactataggggccaaaaataaagaacata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctatgacctctccaaacaaatcattttattctactataggggccaaaaataaagaacata 379
Query: 181 ataatgatcaaacctcattagaacatgtccctatgttctaatagtagtagttctggtcta 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 380 ataatgatcaaacctcattagaacatgtccctatgttctaatagtagtaattctggtcta 439
Query: 241 gtaagagtgggtttgtatgcctaactcttactgttacccaaaggcaggaacccttataac 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtaagagtgggtttgtaagcctaactcttactgttacccaaaggcaggaacccttataac 499
Query: 301 ctcttatctttacggggctctgtcagttgtttccaggtgatggcttgcattaaaatgctg 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 500 ctcttatctttacggggctctgtcagttgtttccaggtgatggtttgcattaaaatgctg 559
Query: 361 gagcctggcacccagtgcttggagggatcttcttcacagctaagatttctttcttcactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gagcctggcacccagtgcttggagggatcttcttcacagctaagatttctttcttcactt 619
Query: 421 agcaccttgtataanatgtcttgccattg 449
|||||||||||||| ||||||||||||||
Sbjct: 620 agcaccttgtataaaatgtcttgccattg 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 848
Length adjustment: 10
Effective length of query: 439
Effective length of database: 838
Effective search space: 367882
Effective search space used: 367882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_p23.g1 MSMg01no356_p23.g1 CHROMAT_FILE:
MSMg01no356_p23.g1 PHD_FILE: MSMg01no356_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:53 2005
(493 letters)
>mm_chr7_104979430_104980322
Length = 893
Score = 891 bits (461), Expect = 0.0
Identities = 481/493 (97%), Gaps = 9/493 (1%)
Strand = Plus / Minus
Query: 1 tattacctgaaataacaaatcctgaggttgagaaatgaatatagattaaatacaactgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tattacctgaaataacaaatcctgaggttgagaaatgaatatagattaaatacaactgta 588
Query: 61 aagcccagcactcagaaggcaagaaaatcatgagttcaaggtttatatataaaaaagtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aagcccagcactcagaaggcaagaaaatcatgagttcaaggtttatatataaaaaagtca 528
Query: 121 cacagaaattctaccttctgactacctctgaactggtttaatacatcaatctattttcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cacagaaattctaccttctgactacctctgaactggtttaatacatcaatctattttcta 468
Query: 181 taccttaataaatggggataaacattttagagctccctttaccaaaactaagaatgggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 taccttaataaatggggataaacattttagagctccctttaccaaaactaagaatgggca 408
Query: 241 agaaatttacaaaatatcaaagatcagtgggagaatagctattctttctcctgtgcccag 300
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 agaaatttacaaaagaacaaagatcagtgggagaatagctattctttctcctgtgcccag 348
Query: 301 gctattgttttcccaggagctaacacaaagctatgtctcaggtaccttacaagtattctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gctattgttttcccaggagctaacacaaagctatgtctcaggtaccttacaagtattctc 288
Query: 361 tcttctcctcttcctctctccaccattccacgggtttaaaatcaagatctagttccttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tcttctcctcttcctctctccaccattccacgggtttaaaatcaagatctagttccttca 228
Query: 421 tcagagaacagacactagtaatctccttcctcacatcccgaattgccccgagctcaagtc 480
||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 227 tcagagaacagacactagtgatctcct---------cccgaattgccccgagctcaagtc 177
Query: 481 tgtgctgtgaacc 493
|||||||||||||
Sbjct: 176 tgtgctgtgaacc 164
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
