BAC Information

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BAC

Clone NameMSMg01-357D12
Chromosome7 (Build37)
Map Location 124,108,391 - 124,294,771
singlet/doubletdoublet
Overlap genenone
Upstream geneSox6, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
Downstream geneXylt1, LOC669758, Rps15a, Arl6ip1, 2610207I05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357D12.T7 (MSMg01no357_d12.b1)MSMg01-357D12.TJ (MSMg01no357_d12.g1)
ACCAG467174AG467175
length757766
length of high quality
(start - end)		470 (42 - 511)454 (74 - 527)
definitionCHROMAT_FILE: MSMg01no357_d12.b1 PHD_FILE: MSMg01no357_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:09 2005CHROMAT_FILE: MSMg01no357_d12.g1 PHD_FILE: MSMg01no357_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,108,391 - 124,108,856)(124,294,318 - 124,294,771)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAAGTTCCTGGTCATGGCCCAGTATTATTACACTCCAATCCTGTGGTTC
TTCATGCTAAGGTGCAAATATTGATCTCTCTACTTTCTCATTTATCCTGT
TATTAGTGACTACCTAACTCTGTTAGGATTTAGCTTCTTTATCTGTAAGC
GATAATTAAACTAGCAGTTGCTTTTCTTTAAAAATAAAACACCACAGCCA
GCTTTCTACTCTAGAGATTGTGGTTTAATTGGTTTGGGCTGCACCATGAA
CACTGGAATAAAAAGAAACAAATGCTCCCCCAAGCAGTTCTAACATTGCC
AACAGAGAAACAAGAGAGAAGATGGGGAAGAGAGGGAGGGAGTATGTCAC
CCATGGACTGTGTCTTTGAGAAATGTCACCAACCTTTCTCATTCTGCAAA
AGGGGAATGATAGAAGTACCAATATCTTAGTTCATTTTCTCTTGCTTCAA
CAAAATACCCAAAGTGACATTATTTATGAAAAATGGAAGCTGATTTACCT
CACGCTTTTACAGCCTGAGAAGTCTAAGTGTAGGGTGATGTGTTACTCCT
TGCATCCGTTGAGGGCTCCTTCCTGTTACTGAAAGCACCATATATCTTCT
TCTTTGGCTTATCCGCCTTGTGCACCTTTGTCTGTTTCCTCCCCTATGAC
CTTGTTCACCGCTGATTAGACCTTCCCTCCCTTTTATCCGCTTCGCATTT
TTTACAN

ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGAAAGTCTGAACTAGAGATCCTGT
CTCCAAAATAATTATAAAAAGGTTTATTTAATAAATTACTGACTTACTTA
GCGGTTGTTTTGTGTGGCAGTTACTGAACAGTACAGCAGAGCTTTCTTTC
TTTCTTCAGTGCTGCGGAAGAAGCAGGAGTTTGCATATGCTAAGCATGTA
CTCTACCATGGAGATACGGCCGCAGCCTTGTGACATGCGTTTACATCAAA
GAGAAATGATTAAAAGCCCTGCTATCAAATCCGACTTATGATTTCTGTGA
TACAAATATGGGCATGGAAAAGTATAGGATTGATGTGTGAGCATTCTGGA
TGGATGGGGCTTAGAGACTTTAGATGTTTTAAGTTGCTAATATAGTTCAG
GGGAAAGGAAACCCTGAGGGTCGCAGATCCAACATTTAACCACCGTATAT
TGGTGATCAGTAAGAACTGGAGTTTCAAACAAACACGTGTGTCTGTGCCT
ACCTTCCAACTACTTAATTACTATGCTATGTTGCCCATTTCTGGATATGG
CAAGAATTACGATTTTTTTGGGTGCCTTTTTTTTTTTCCCTTCCGGACCG
CCTCTATAATTTACAACAAATTCTATAACCCTTCGTCCTTTTTATATGTC
TCCACGTTACCCAAGCTCCCTTGGGGTTTTTTTTTGAATGGGTTGTTTTT
TCTTTTTATAATATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_d12.b1 MSMg01no357_d12.b1 CHROMAT_FILE:
MSMg01no357_d12.b1 PHD_FILE: MSMg01no357_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:09 2005
         (470 letters)



>mm_chr7_124108187_124109056
          Length = 870

 Score =  893 bits (462), Expect = 0.0
 Identities = 465/466 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagttcctggtcatggcccagtattattacactccaatcctgtggttcttcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagttcctggtcatggcccagtattattacactccaatcctgtggttcttcat 264

                                                                       
Query: 65  gctaaggtgcaaatattgatctctctactttctcatttatcctgttattagtgactacct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctaaggtgcaaatattgatctctctactttctcatttatcctgttattagtgactacct 324

                                                                       
Query: 125 aactctgttaggatttagcttctttatctgtaagcgataattaaactagcagttgctttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 aactctgttaggatttagcttctttatctgtaagcgataattaaactagtagttgctttt 384

                                                                       
Query: 185 ctttaaaaataaaacaccacagccagctttctactctagagattgtggtttaattggttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctttaaaaataaaacaccacagccagctttctactctagagattgtggtttaattggttt 444

                                                                       
Query: 245 gggctgcaccatgaacactggaataaaaagaaacaaatgctcccccaagcagttctaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggctgcaccatgaacactggaataaaaagaaacaaatgctcccccaagcagttctaaca 504

                                                                       
Query: 305 ttgccaacagagaaacaagagagaagatggggaagagagggagggagtatgtcacccatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgccaacagagaaacaagagagaagatggggaagagagggagggagtatgtcacccatg 564

                                                                       
Query: 365 gactgtgtctttgagaaatgtcaccaacctttctcattctgcaaaaggggaatgatagaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gactgtgtctttgagaaatgtcaccaacctttctcattctgcaaaaggggaatgatagaa 624

                                                         
Query: 425 gtaccaatatcttagttcattttctcttgcttcaacaaaataccca 470
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtaccaatatcttagttcattttctcttgcttcaacaaaataccca 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no357_d12.g1 MSMg01no357_d12.g1 CHROMAT_FILE:
MSMg01no357_d12.g1 PHD_FILE: MSMg01no357_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:09 2005
         (454 letters)



>mm_chr7_124294118_124294971
          Length = 854

 Score =  832 bits (430), Expect = 0.0
 Identities = 448/454 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaaagtctgaactagagatcctgtctccaaaataattataaaaaggtttatttaata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 654 caggaaagtctgaactagagatcctgtctccaaaataattataaaaaggtttgtttaata 595

                                                                       
Query: 61  aattactgacttacttagcggttgttttgtgtggcagttactgaacagtacagcagagct 120
           ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 594 aattactgacttacttagcggttgttttgtgtggcagttactgtacagaacagcagagct 535

                                                                       
Query: 121 ttctttctttcttcagtgctgcggaagaagcaggagtttgcatatgctaagcatgtactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttctttctttcttcagtgctgcggaagaagcaggagtttgcatatgctaagcatgtactc 475

                                                                       
Query: 181 taccatggagatacggccgcagccttgtgacatgcgtttacatcaaagagaaatgattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 taccatggagatacggccgcagccttgtgacatgcgtttacatcaaagagaaatgattaa 415

                                                                       
Query: 241 aagccctgctatcaaatccgacttatgatttctgtgatacaaatatgggcatggaaaagt 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aagccctgctatcaaatctgacttatgatttctgtgatacaaatatgggcatggaaaagt 355

                                                                       
Query: 301 ataggattgatgtgtgagcattctggatggatggggcttagagactttagatgttttaag 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ataggattgatgtgtaagcattctggatggatggggcttagagactttagatgttttaag 295

                                                                       
Query: 361 ttgctaatatagttcaggggaaaggaaaccctgagggtcgcagatccaacatttaaccac 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 294 ttgctaatatagttcaggggaaaggaaaccctgagggtcacagatccaacatttaaccac 235

                                             
Query: 421 cgtatattggtgatcagtaagaactggagtttca 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 cgtatattggtgatcagtaagaactggagtttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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