BAC Information

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BAC

Clone NameMSMg01-358A08
Chromosome7 (Build37)
Map Location 109,892,031 - 109,892,492
singlet/doubletsinglet
Overlap geneOlfr78
Upstream geneClpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559
Downstream geneOlfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358A08.T7 (MSMg01no358_a08.b1)MSMg01-358A08.TJ (MSMg01no358_a08.g1)
ACCAG467777AG467778
length726731
length of high quality
(start - end)		562 (31 - 592)462 (66 - 527)
definitionCHROMAT_FILE: MSMg01no358_a08.b1 PHD_FILE: MSMg01no358_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:11 2005CHROMAT_FILE: MSMg01no358_a08.g1 PHD_FILE: MSMg01no358_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCCTATAGTGAGAGGATCCGCGGAATTCTCACCTGA
GGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAA
TCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCTACCTCACACCG
GTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTTGCGAGG
ATGTGGAGAAAGAAGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTG
TACAACCATTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATA
GTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGA
TGTCCCAACCAGTAAGAAGGACACATGCTCAATTATGTTCATAGCAGCCT
TGTTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAG
GAATGGATACAGAAAATGTGGTACATTTACACAATGGAATACTACTCAGC
TATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGG
AGGGCATCATCCTGAGTGTGGTAACCCAATCACAAAGGAACTCACACAAT
ACGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTATGATACCCAAG
ATATAAGATACAATTTGCTAAACGCATGAAACTCTAGAAGAATGAAAACC
AAAGTGTGGACACTTTTCTCCTTCTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTATTTGGAAAAAAAGAAATAACCTTGGAGGTGACT
TCCAGGCATAAAGATGGCTGCTGATCGGGAACACAAAGCTGTCACTGGAA
GCATGTCTGATAGCTAGGATCTGCTGGAGGTGGTGAATCTTGTCACCACC
TCCCTCTGCAAAAACATGAATAGAGGGAGCTGCTTGATTTTGCTTTCTGA
GTTGCTATTGTGTTTCTCTCTCTCCCTTTGCAAACTTAGAGCCAAGGACC
TAGAATCCTGAATATTATAAAAACGTTTTCCAATCTCTCTATCTTGGAAG
ATCCTTATTCCCTCTTCTGTCTGCCTAATTCTGTTCATGCTCCAAGACAG
AAATGTAAAGATCATCTCTCCAAGATGGCTGCTCTGTCTTCGCCGTTCCC
TGCAGTCAATGAATTCCTTTGTAAGCCTTTATCACAGGGCTCTGACATAT
GTGTTCCTTACCCATCTCATACCCTAGGCAAGCTATGTCACGTCAGAAGG
AATGATTCTCATAGCTGCATCTCACAGATATGTTTAACTGGTGATGCAAG
TGAATGTTTCTGAAATTCGAATTAATATAATAAATAAAACAAAAGGGGAA
GGGGAAAGCGCGACCAACAAAAACTGCATTTCTTTTTTTTTCTCCTGCAC
AACTTTTCTCCATCCATGACAAATATTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_a08.g1 MSMg01no358_a08.g1 CHROMAT_FILE:
MSMg01no358_a08.g1 PHD_FILE: MSMg01no358_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:11 2005
         (462 letters)



>mm_chr7_109891831_109892692
          Length = 862

 Score =  862 bits (446), Expect = 0.0
 Identities = 458/462 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttggaaaaaaagaaataaccttggaggtgacttccaggcataaagatggctgctgat 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tatttgggaaaaaagaaataaccttggaggtgacttccaggcataaagatggctgctgat 603

                                                                       
Query: 61  cgggaacacaaagctgtcactggaagcatgtctgatagctaggatctgctggaggtggtg 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 602 cgggaacacaaagctgtcactggaaacatgtctgatagctaggatctgctggaggtggtg 543

                                                                       
Query: 121 aatcttgtcaccacctccctctgcaaaaacatgaatagagggagctgcttgattttgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aatcttgtcaccacctccctctgcaaaaacatgaatagagggagctgcttgattttgctt 483

                                                                       
Query: 181 tctgagttgctattgtgtttctctctctccctttgcaaacttagagccaaggacctagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tctgagttgctattgtgtttctctctctccctttgcaaacttagagccaaggacctagaa 423

                                                                       
Query: 241 tcctgaatattataaaaacgttttccaatctctctatcttggaagatccttattccctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tcctgaatattataaaaacgttttccaatctctctatcttggaagatccttattccctct 363

                                                                       
Query: 301 tctgtctgcctaattctgttcatgctccaagacagaaatgtaaagatcatctctccaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tctgtctgcctaattctgttcatgctccaagacagaaatgtaaagatcatctctccaaga 303

                                                                       
Query: 361 tggctgctctgtcttcgccgttccctgcagtcaatgaattcctttgtaagcctttatcac 420
           ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tggctgctctgtcttcgtcgtcccctgcagtcaatgaattcctttgtaagcctttatcac 243

                                                     
Query: 421 agggctctgacatatgtgttccttacccatctcataccctag 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agggctctgacatatgtgttccttacccatctcataccctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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