BAC Information

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BAC

Clone NameMSMg01-358J11
Chromosome7 (Build37)
Map Location 5,806,461 - 5,807,006
singlet/doubletsinglet
Overlap genenone
Upstream geneIsoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647
Downstream geneV1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358J11.T7 (MSMg01no358_j11.b1)MSMg01-358J11.TJ (MSMg01no358_j11.g1)
ACCAG468210AG468211
length728722
length of high quality
(start - end)		532 (35 - 566)551 (64 - 614)
definitionCHROMAT_FILE: MSMg01no358_j11.b1 PHD_FILE: MSMg01no358_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:54 2005CHROMAT_FILE: MSMg01no358_j11.g1 PHD_FILE: MSMg01no358_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTT
CATTTCTGAGCCACATTTTTAATGGGGTTATTTGATTTTCTGAAGCCCAC
CTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCCGATTTGG
GATATGTAAAGATCCTTTCCCAATCTGTTGGTTGCCTTTTTGTCTTATTG
ACGGTTTCGTTTGCCTTGCAGAAGCTCTGCAATTTTATGAGGTCCCATTT
ATCGTTTCTCAATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAACT
TTCCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTGAA
AGTTTCAGTATCTCTGGTTTTATGTGGGGTTCCTTAATCCACTTAGATTT
GACCTTAGTACAAGGAGATAGAAATGGATCAATTTGCATTCTTCTACATG
ATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTC
CATTGGATGGTTTTAGCTTCCTTGTCAAAAATCAAGTGACCATAGGTGTG
TGGGTTCATTTCTGGGTCTTCAATTCTGGTTCATTGGTCTACTTTTCTGT
CACTATACCAGTACCATACAGTTTTTTATAACAGTTGCTCCGTAAAACAG
CTTTTAGGCCGGACATTGTGGATTCTACCAAAGGTCCTTTTATCCTTTGA
AAAAAATTTTTGCTAATCCTAAGGTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGTGATGGAACCTAGATGCAGAAACTAAAGGACAAAC
ATTGGTGATATGTGATTTACTCTACTGGTCCCTGGGACTTGTCCAGCCTG
CTTTCTTACAGCTCCAGGATTGCCAGCCCTGGGGATGGCATCACTCACAG
TCATCAAGGTCCTGCAGATCAATCCTCAATCAAAAAATACACCACAAGCT
TGTTCACAAACCTATATTCTGGTTCCCTATTGTCAAATGCCTATATTTTG
GATCAGACACATTGACAGTACAAAAAGTCAGCTTTCTTCTTTGGATTGTC
ACTTCAGTTTTTACTTTCATCATGAAAATCAAAACTGAGGCCATCGATTT
CTATTTGACCTAGCGGGCGAGTTTTGTTTTGTTTTTCATGTTAATTCTGC
CTTTTTTCTAATTTAGATTATCTATTGCTAGATTTTTACATAGTGTGAAA
TTCTTAACATTTCAGTTATCAGTGAATACCAGGTTGTATTCGCTACATAA
TGGAAGCTGCCTAAAATGATACTGTAGTGAAAACGACTATTTAACAACCA
TGTGAGCTACTGCATGCTTTTTGATTAATCATTCCATTCATTTATATCCC
ACATGATATCATCCTTCCTCGTTTCACCTCCCAAACCCTCCCATATCATA
TCAAAACTCTCCCCCTTCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_j11.g1 MSMg01no358_j11.g1 CHROMAT_FILE:
MSMg01no358_j11.g1 PHD_FILE: MSMg01no358_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:54 2005
         (551 letters)



>mm_chr7_5806257_5807206
          Length = 950

 Score =  598 bits (309), Expect = e-175
 Identities = 490/557 (87%), Gaps = 23/557 (4%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaacctagatgcagaaactaaaggac-aaacattggtgatatgtgatttactctactgg 65
           |||||||||| |||||||||||||||| |||       ||||||||||||| | ||||||
Sbjct: 205 ggaacctagaggcagaaactaaaggactaaa-------gatatgtgatttattgtactgg 257

                                                                       
Query: 66  t-ccctgggacttgtccagcctgctttcttacagc-tccaggattgccagccctggggat 123
           | ||| ||| |||| |||||||||||||||||||| |||||| || ||||||| ||||||
Sbjct: 258 tccccaggg-cttgcccagcctgctttcttacagcatccaggtttaccagcccaggggat 316

                                                                       
Query: 124 ggcatcactcacagtcatcaaggtcctgcagatcaatcctcaatcaaaaaatacacca-c 182
           |||||||| ||||||||||| ||||||||| |||||||| |||||||||| |||| || |
Sbjct: 317 ggcatcacccacagtcatcatggtcctgcacatcaatccccaatcaaaaactaca-cagc 375

                                                                       
Query: 183 aagcttgttcacaaacctatattctggttccctattgtcaaatgcctatattttggatca 242
           |||||||||| |||||||||||||||||||| | ||||||| || |||||||||||||||
Sbjct: 376 aagcttgttcgcaaacctatattctggttccttgttgtcaagtgtctatattttggatca 435

                                                                       
Query: 243 gacacattgacagt--acaaaaagtcagctttcttctttggattgtcacttcagttttta 300
           ||||||||| ||||  | |||||||||| || ||||||||||||| |||||||||| |||
Sbjct: 436 gacacattgccagtaaaaaaaaagtcagattccttctttggattgacacttcagttctta 495

                                                                       
Query: 301 ctttcatcatgaaaatcaaaactgaggccatcga-tttctatttgaccta--gcgggcg- 356
           ||||||||||| |||||||||||||||||||| | ||||||||| |||||  | | ||| 
Sbjct: 496 ctttcatcatggaaatcaaaactgaggccatc-attttctatttcacctaatgagagcgt 554

                                                                       
Query: 357 --agttttgttttgtttttcatgttaattctgccttttttctaatttagattatctattg 414
              ||||||||||||||||||||||||||||| |||||  ||||||| | || |||||||
Sbjct: 555 tttgttttgttttgtttttcatgttaattctggcttttccctaattt-ggttgtctattg 613

                                                                       
Query: 415 ctagatttttacatagtgtgaaattcttaacatttcagttatcagtgaataccaggttgt 474
            ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 614 atagatttttacatagtgtgaaattcttaacatttcagttgtcagtgaataccaggttgt 673

                                                                       
Query: 475 attcgctacataatggaagctgcctaaaatgatactgtagtgaaaacgactatttaacaa 534
           ||| ||||||||||| |||||||||||  | |||||||||||||||| ||||||||||||
Sbjct: 674 attagctacataatgtaagctgcctaaggtaatactgtagtgaaaacaactatttaacaa 733

                            
Query: 535 ccatgtgagctactgca 551
           ||| ||||| |||||||
Sbjct: 734 ccacgtgaggtactgca 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 950
Length adjustment: 10
Effective length of query: 541
Effective length of database: 940
Effective search space:   508540
Effective search space used:   508540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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