BAC Information

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BAC

Clone NameMSMg01-360E03
Chromosome7 (Build37)
Map Location 59,863,812 - 59,864,461
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc17a6, EG620599, LOC654473, LOC100040608, Gas2, 1700015G11Rik, EG668783
Downstream geneEG620782, LOC100040692, Gm1865, LOC100040718
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360E03.T7 (MSMg01no360_e03.b1)MSMg01-360E03.TJ (MSMg01no360_e03.g1)
ACCAG469476AG469477
length735744
length of high quality
(start - end)		652 (45 - 696)546 (75 - 620)
definitionCHROMAT_FILE: MSMg01no360_e03.b1 PHD_FILE: MSMg01no360_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:57 2005CHROMAT_FILE: MSMg01no360_e03.g1 PHD_FILE: MSMg01no360_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGCTACTATTAGCAGTCTTCAGATCAAGATATAGAACTCATGCT
TCCTCCAGCACCAAGTCAACATTCGTGGTAATGACATCATAATGATAATG
GACTGGATCTCTGAGCATATAAGCCAGACCAATTAAATGTGTGACTTAAG
AATAGTTATCTTGGTTATGGTGTCTCTTCACAGCAATAAAATCCCAACTA
ATACAAATACCAGGTTACATTCACTGTTCCGTGATTACTCTCTCTCTGTC
TACCCTTTTTTCTTTTAGATGGCAAGGCTGTCTTGCTAACTGAATGCCAT
TCAATTGATCTGCCTGTGAGATTTACTATATTTTTCTGTCAATACCCAAC
ATTTCATGAAGAGGTTTCTAACAGTTCACAATAGATTCACAGGGTACTTA
CTCTGTTTCACAGAATACCCTTAAATTTTCTCATGAATTAGTTCTGCTTG
AAGCAACTTTGCTGTGTAGGTTACATGAGTAGTGCTACCTGTTACATGAG
GAATCTACATGAGGATACACTATAGGCTAATGTCTTTCACTACTACCAAC
TTCATGATTTAAAACAGAAGATAAATCATTTTCATATTGTCATTGGAAAG
CAGACATTATAATGGAAAGTTCTGTAATTGTATAATTTATTGTCTTGTAA
TTCACACTTGCTGATTTACATAAACCATGGTAATC

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGAAGTTCTTAGGCAAATGGATGGA
ACTAGAAAAATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACACA
CATGGTATGCCCTCACTGATAGGTGGCTATTAGCCCAGAAGTTCGGAATA
CCCAAGATACAATTCACAGACCAAATGAAGCTCAAGAAGAAGGAAGACCA
TAGTGTGGATACTTCAGTTCTTCTTAGAAGGGGGTTAAATTACCCATGGG
AGGAGATACAGGACAAAGTTTGGAACAGAGACTGAAGGAAAGGCCATCTA
GTAACTGTCCCACCTAGGGATTCATCCCATATACAGACACTATTTTGGAT
GCCAACAAGTGCTTGCTGACAGGAGCCTGATATAGCTGTCTCCTGAGAGG
CGCTGCCAGTGCCTGACAAATACAGAAGTGGATGCTCACAGCCATCCATT
GGACTGAGCACAGTTCCCCAATGGAGGAGTTAAAGAAAGGACCCAATGAG
CTGAAGGGTTTGCAGCCCAATAGGAGGAACAACAATATGAATCAACTAGT
ACTCCCAGAGCTCCCAGGAACTAAACCACCCACCAAAGAGTACATATGGA
GAGACTGAAGGCTTCAGATGCATATGCAGCAGAAGATAGCCTTGTCGGAC
ATCAGTGAGAGGAGAGGCTCTTAGCCTTATGAAGGGTGAATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_e03.b1 MSMg01no360_e03.b1 CHROMAT_FILE:
MSMg01no360_e03.b1 PHD_FILE: MSMg01no360_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:57 2005
         (652 letters)



>mm_chr7_59863610_59864661
          Length = 1052

 Score = 1203 bits (622), Expect = 0.0
 Identities = 643/650 (98%), Gaps = 1/650 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaggctactattagcagtcttcagatcaagatatagaactcatgcttcctcca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattccaggctactattagcagtcttcagatcaagatatagaactcatgcttcctcca 262

                                                                       
Query: 64  gcaccaagtcaacattcgtggtaatgacatcataatgataatggactggatctctgagca 123
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 263 gcaccaagtcaacattcgtggtaatgatatcataatgataatggactggatctctgagca 322

                                                                       
Query: 124 tataagccagaccaattaaatgtgtgacttaagaatagttatcttggttatggtgtctct 183
           |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 323 tataagccagacgaattaaatgtgtgacttaagaatagttatcttggtcatggtgtctct 382

                                                                       
Query: 184 t-cacagcaataaaatcccaactaatacaaataccaggttacattcactgttccgtgatt 242
           | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 383 ttcacagcaataaaatcccaactaatacaaataccaggttacattcactgttctgtgatt 442

                                                                       
Query: 243 actctctctctgtctacccttttttcttttagatggcaaggctgtcttgctaactgaatg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 actctctctctgtctacccttttttcttttagatggcaaggctgtcttgctaactgaatg 502

                                                                       
Query: 303 ccattcaattgatctgcctgtgagatttactatatttttctgtcaatacccaacatttca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccattcaattgatctgcctgtgagatttactatatttttctgtcaatacccaacatttca 562

                                                                       
Query: 363 tgaagaggtttctaacagttcacaatagattcacagggtacttactctgtttcacagaat 422
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgaagaagtttctaacagttcacaatagattcacagggtacttactctgtttcacagaat 622

                                                                       
Query: 423 acccttaaattttctcatgaattagttctgcttgaagcaactttgctgtgtaggttacat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 acccttaaattttctcatgaattagttctgcttgaagcaactttgctgtgtaggttacat 682

                                                                       
Query: 483 gagtagtgctacctgttacatgaggaatctacatgaggatacactataggctaatgtctt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gagtagtgctacctgttacatgaggaatctacatgaggatacactataggctaatgtctt 742

                                                                       
Query: 543 tcactactaccaacttcatgatttaaaacagaagataaatcattttcatattgtcattgg 602
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tcactactacaaacttcatgatttaaaacagaagataaatcattttcatattgtcattgg 802

                                                             
Query: 603 aaagcagacattataatggaaagttctgtaattgtataatttattgtctt 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaagcagacattataatggaaagttctgtaattgtataatttattgtctt 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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