BAC Information

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BAC

Clone NameMSMg01-360E24
Chromosome7 (Build37)
Map Location 123,507,628 - 123,508,090
singlet/doubletsinglet
Overlap genePik3c2a
Upstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13
Downstream geneLOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360E24.T7 (MSMg01no360_e24.b1)MSMg01-360E24.TJ (MSMg01no360_e24.g1)
ACCAG469518AG469519
length784877
length of high quality
(start - end)		467 (46 - 512)---
definitionCHROMAT_FILE: MSMg01no360_e24.b1 PHD_FILE: MSMg01no360_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:01 2005CHROMAT_FILE: MSMg01no360_e24.g1 PHD_FILE: MSMg01no360_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAAACAGTCTCAGCTACACAGAGAAACCCTGTCTTGAAAAGAAA
CTTTTTTGTAAATTATATGATAATTAATAAAAAATTATTATTCAAAACTA
GCCATTTAATTCTTTCTTTAGGTTAAGTTTTATTTGACACAAAATGCTTT
TTTGACTATTTTAATGAAAAAGATTAATTATGTTTACATAAATTACATGT
ACACATTTACATTATCTTATGCTGTTTTCACGTTAAAAGGGAAGTACCCC
TGCAGCATAACACATTGATGGAAAATTTGACAAAAACCCATCAAATAAAT
GTATTTGACTTACTTTGCATCAAGGAGCTCCAATGCAGCTAGTGGGCACA
ATGGCGGCCACTGATGCAGCAATGAGTAAGTTTTGGCAAGATTAGCCCAC
TTCCAGTTTGGAGCACTTGCTAATATCTTCGGAAGACAATTTGGATGTTT
TAGGCAATAATAGCGGNTTTCCCACAAAAAGACCTTATCTTTCTTTAGAA
AGGCTGCTTATATAATAGAATTAAATTACTTCCCGGAGAATTATGAAAAA
ACTATCCTCATAATTAAAATTCCAAGAAAAAAAAAAATTTCCCTTGTGAC
AGCCACTTCCTTGTTGGGCCCAAAACCAATATCCAATTGGGAATTCTCTG
GGGTGGGAACACCCCCAAACCTCCCCTTTTTTTGGAAAAAGAAAAACTTC
TTGCCCTGGCAAAAAGGCCTAATTTTTTAAATAN

CTAGCACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATCCACATGTANTCCAAACCAGCCTTGAACTAGTGGN
CAGCCCCTTGCTTCTGCCTCCTGACTGCTTAGATTACGGGCATGTGCCCA
CATCTCCCANCTATTCGGGCTTTTTTTTTTTTTTTTCCCCTCAAGAAACA
CTCCCCGGTTGAAACCCCCCGTGGAAACCAAGGGGGCCTTGAATTAAAAA
AAACAACGCGCCCTTCCCTCCTTCGTGGGGGAATAAAAGGGGGGGCCCCC
TAAACCCCCCCAATACCGGGGTTTTTTTGGGGGGGGGGGTTTCGGCNNNC
CCCCCCNNNCTNTCCTCCCTCCCNNNCCCCCCCCNCTCCTTCCCNNCCCC
CNTCCNTTCCTCCCNCCCTCCCCNCCCNCCCCCCCTCCTTNCCCCCCTTC
CNNNCCCCCCNCCCNNCCCCCCCTCTTNCCTCCNCCCCCCNNCCCCCTCC
CNNNNTCNNTCCCNCCCCTTNCTNTCCCNNCTCCCNCCCTTCCCTTTTCC
CCCCCCTTCCCCCCCNCCCCTCCTCNCCTTTCCTCCCCTCTCTCCCCTCC
TTTTCTCTTTCTCCTCCCCCCCCTTTTTTCTCCCCCTCCCTCTTTTTTTC
TTCCCCCTTTTCCCCCCCCCCCCCTTTTNCCCCCCTCTCTCTTTTTCTTT
CCCCTTCCCCCTCCCNTCCCCCCCTCCCCTCCCNTNCCCCCCTTCTTCCC
CCCTTTCTTCCTTTTTCCCCCCTCCCCTTCCCTTCTTTTTCCCTTTTCCT
TCCTTTNTCCCCCNTTCCCCTTTTCCTTCTTCCCTNTTCTCTTCCCCTTT
TTCCTATAACTAAAAAACAAATAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_e24.b1 MSMg01no360_e24.b1 CHROMAT_FILE:
MSMg01no360_e24.b1 PHD_FILE: MSMg01no360_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:01 2005
         (467 letters)



>mm_chr7_123507424_123508290
          Length = 867

 Score =  880 bits (455), Expect = 0.0
 Identities = 461/463 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgaaacagtctcagctacacagagaaaccctgtcttgaaaagaaacttttttgt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgaaacagtcacagctacacagagaaaccctgtcttgaaaagaaacttttttgt 264

                                                                       
Query: 65  aaattatatgataattaataaaaaattattattcaaaactagccatttaattctttcttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaattatatgataattaataaaaaattattattcaaaactagccatttaattctttcttt 324

                                                                       
Query: 125 aggttaagttttatttgacacaaaatgcttttttgactattttaatgaaaaagattaatt 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 aggttaagttttatttgacacaaaatgcttttttgaccattttaatgaaaaagattaatt 384

                                                                       
Query: 185 atgtttacataaattacatgtacacatttacattatcttatgctgttttcacgttaaaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgtttacataaattacatgtacacatttacattatcttatgctgttttcacgttaaaag 444

                                                                       
Query: 245 ggaagtacccctgcagcataacacattgatggaaaatttgacaaaaacccatcaaataaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaagtacccctgcagcataacacattgatggaaaatttgacaaaaacccatcaaataaa 504

                                                                       
Query: 305 tgtatttgacttactttgcatcaaggagctccaatgcagctagtgggcacaatggcggcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtatttgacttactttgcatcaaggagctccaatgcagctagtgggcacaatggcggcc 564

                                                                       
Query: 365 actgatgcagcaatgagtaagttttggcaagattagcccacttccagtttggagcacttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actgatgcagcaatgagtaagttttggcaagattagcccacttccagtttggagcacttg 624

                                                      
Query: 425 ctaatatcttcggaagacaatttggatgttttaggcaataata 467
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctaatatcttcggaagacaatttggatgttttaggcaataata 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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