BAC Information

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BAC

Clone NameMSMg01-360J10
Chromosome7 (Build37)
Map Location 114,662,898 - 114,663,154
singlet/doubletsinglet
Overlap geneSyt9
Upstream geneEG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik
Downstream geneOlfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360J10.T7 (MSMg01no360_j10.b1)MSMg01-360J10.TJ (MSMg01no360_j10.g1)
ACCAG469727AG469728
length758752
length of high quality
(start - end)
244 (76 - 319)238 (80 - 317)
definitionCHROMAT_FILE: MSMg01no360_j10.b1 PHD_FILE: MSMg01no360_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:22 2005CHROMAT_FILE: MSMg01no360_j10.g1 PHD_FILE: MSMg01no360_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCCGCGG
AATTCAGGGGGTTTTCCCAGAGAAGCATCTTTTTGTAGGTAGTAAGTACA
ACACACAGGACTTCCTCAATCTTCCCCTATCAGTGGCTTCCCGTTTTTTT
TCTGTCCTTTATTCCAGGTCCTCTTTCCTGCCATGGGTAAACAGTAGGAC
CATCCATTTGTTCAACATGGTGATCTGGCTATCACCCCAAACTCCTCCCT
GTCTCTGACTTTCTATGCGATGTTAGCGCATAACCCATTGGAGTCTGTCC
ACTCTCCAGAGCCTTCAACTTCTTTCTTCTAGCTTCAGCACACCCATCCT
TATCATATCTCTCCAGCCTCCTGCCTAGCTCCTCCAGATGGTCAGTGCAG
TCCCTTTAAAATATCAACTCAAGCATGCTGCTCTTCATCTTAAAGTCATT
CCTAAGTTCTGATAGAAAGGGCATCCCCACACCCCCTTTCAGGTACCAAG
CCCCTGAGTTCAATCATTTCAGCTGCTGTCCCGGTGCTGGTCCACCTCTT
CACTATTCTATGCCTTTGAATGTACAGATCTCTTCCCTTCCCTCCTCCTC
TTTGGTCAACGGGAGAGAAAATTCTAACCCATTCCCAACATCTTGCTCAA
ACTGTGTTGGTATGTGCTCTGGATGCATGTAAAATCTCTTCCCCCATGAT
CTCTTATGTTATCCCGTATAACACCCCTCCCATTATTTGCGGCCCAATAC
ACAGGGAN
GAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGCTCAACACTGCCTTCATACTTGAAT
TGCATGATGGTCATTCGTGGTCAACTTGACAGGAGCTAGAATCACCTATG
AGGAAAAACCTCAAGGCATGACTGTAAGGGCATTTCTACATTAATTCCCT
ATATGTCAGTAACACCATCATGTGGGCTGGGGTACCAGACTGAATAAAAT
GTAGAAAATGAGCTAGGCATCAATTTTTATCTATCTTTCCTGACTACAGA
TGCAACATGACCCATTGCTATTTTTCCCTTGCCACCATGACAGGCTGTGC
CTTTAAACAGTGAGAAAACAAAACAAACAAACAAACAAAACCCAAAACTT
CCTTCCTTAAATTGCTCTTGTTGGGTACTTTGTCACAACAAAGAGAAAAT
TAGCCAGTACAAACTGCAACTTCATGTTATACCTGCAGCCTGCCAGATCC
CTCAGTATACCAAGGGCTTGCCAGTCACCACAGCTGCTACAGTCTCTGAA
GATAACTCCCTCCTGTGCTTCCATTTCTGGTTCCCTGCCCATTACCCTTC
ATAGCCTGTACTCGTTATTCTTTGTCCCCTTCCATTATCCCCAAATTCCG
GATCTTTTTGTCTTTCCTTTTCTTCCCTCTTGCTGTATCATTCGGCTTCC
TTACCTTTAGCTTACTCCCCTTTGATTCCTTACTTTAAAACTTCCTTTTC
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_j10.b1 MSMg01no360_j10.b1 CHROMAT_FILE:
MSMg01no360_j10.b1 PHD_FILE: MSMg01no360_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:22 2005
         (244 letters)



>mm_chr7_114662630_114663273
          Length = 644

 Score =  412 bits (213), Expect = e-119
 Identities = 240/257 (93%), Gaps = 13/257 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctttttgtaggtagtaagtacaacacacaggacttcctcaatcttcccctatcagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 catctttttgtaggtagtaagtacaacacacaggacttcctcaatcttcccctatcagtg 466

                                                                       
Query: 61  gcttcccg-------------ttttttttctgtcctttattccaggtcctctttcctgcc 107
           ||||||||             |||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gcttcccgtttttttttttttttttttttctgtcctttattccaggtcctctttcctgcc 406

                                                                       
Query: 108 atgggtaaacagtaggaccatccatttgttcaacatggtgatctggctatcaccccaaac 167
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 405 atgggtaaacagtaggaccatccatctgttcaacatggtgatctggctatcaccccaaac 346

                                                                       
Query: 168 tcctccctgtctctgactttctatgcgatgttagcgcataacccattggagtctgtccac 227
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 345 tcctccctgtctctgactttctatgcgatgttagcacataacccattggagtctgtccac 286

                            
Query: 228 tctccagagccttcaac 244
           | ||||||||| |||||
Sbjct: 285 tgtccagagccgtcaac 269


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)