BAC Information

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BAC

Clone NameMSMg01-361A20
Chromosome7 (Build37)
Map Location 96,541,333 - 96,708,362
singlet/doubletdoublet
Overlap geneFzd4, Prss23
Upstream geneRab38, LOC100039924, LOC666598, EG621562, Tmem135, LOC100039969
Downstream geneLOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361A20.T7 (MSMg01no361_a20.b1)MSMg01-361A20.TJ (MSMg01no361_a20.g1)
ACCAG470079AG470080
length788783
length of high quality
(start - end)
471 (47 - 517)433 (79 - 511)
definitionCHROMAT_FILE: MSMg01no361_a20.b1 PHD_FILE: MSMg01no361_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:58 2005CHROMAT_FILE: MSMg01no361_a20.g1 PHD_FILE: MSMg01no361_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,541,333 - 96,541,758)(96,707,933 - 96,708,362)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTAGCCCTATCATCCACCCTCACCCCCACCCATCCCACCCCCA
CCCCCACCCCCACTCAAAGTACTCCATAGAAAGAACTCAAATAGCAAAAT
AGCTGAACTGTAAGTTACCAAGTTTGGAACTGGAGTCAATGTTATGAATC
CCTTTTCAATATGGCAGACCTATGTTGAAAGAGACTGAAGTTTTAGGACA
GAAATACATATTGCATAAACTAGCTGCAGTTAAGTGTGGTGTTTCTGGTG
CCACCTATTGGTCATTCTATAAGATTGAACTATGTGGCAGTATCATATAA
TATAAATGAATAGAAAATATGATTTATGGTGTAACATTCAAAGTTATATA
TTTCAATAGGCCAGAAGAATACAGAAATAGAGTGCTGTGTTTGGATATCA
ACTTTGGTTGTAGCTACTATAAACCATGAGACTGTTTGGTTTTATAATTT
TTACCTCTATTTACTCGCTAACTGAGTCTGTGGAAAGAAATATATAGTGA
GGCATCTCTGGGATCTCTAATATTGGTGAACCAATATTCCTGTTTAACAG
ATTCTATGTCTTGCAATACAACTGTGGGTTCGTATCCTGTTCTTAACGTT
TCATCAACCTTTTGTACCTAAGACAGGTGCCCTCATAATGCTGTGCAAAA
AGTTGGTCCATAAAAAATAAACACGTTTCCCTCCCCCTTTTATAATGGTC
TATGGGCCTAAAAAAAAAAAACCCTTTGTTAGATTGGA
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATCTCGTGACTAATAATTTA
TCATTCTAACTGGAGACCTTTTGGGCATTTGGCTAGACACTGGGTCCTTT
CCTCATACTTCAAATCTAAAAGGGAATCTTAGCTGTGGATGAGCTAGGGC
TTCAGGAAATTCTGGCTGCATCTGCTGATTTGTAAGAAAACTAGAGAGTT
TATTATGAGGGTGAAGAGAGGGTAGATGCTGTTTACTAGTAGAATTTCAA
CATAATATACACAGATTATCAGTTATGAGGCGACTTTGTGAAAGAGAACT
ACAAATTCTTCTGTGACCAAATCAAACATCAGAAGAAAATAACCTTGCCA
GCTTTCAGGCACACATAGGTCAGCGCTACAGGGCAGGCCACACGTCCAGG
TTTACTTCATTAGATGATAATAGGCCATAGCCTAAGTCAGGCTTAGCTGT
AGAGCTGGAGGGAAGACCCTGAGGTTGACTCCAGCGAACTACTCAGGGAA
TTGATTAGTGCTCATAGGCATTCTTTCATTGTTCTGCCAACAGGCCCCAC
CCAAGCTTGTGGAGAGTTTCCCGCTATAGGGCATCAGGCCTGCCGAATGT
TCTTTATTTCTTGTTTTGCCCCGCTTGTTTTCCCACCCTTCTTGGATATA
TTTCTGTTTTTTCCTCTACCCTCGTGGTTTTTAATATTACCCTCGCTTTC
GGCTCTTCGTCGGTCCTCCACCCCCCTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_a20.b1 MSMg01no361_a20.b1 CHROMAT_FILE:
MSMg01no361_a20.b1 PHD_FILE: MSMg01no361_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:58 2005
         (471 letters)



>mm_chr7_96541089_96541959
          Length = 871

 Score =  762 bits (394), Expect = 0.0
 Identities = 418/426 (98%)
 Strand = Plus / Plus

                                                                       
Query: 45  cccacccccacccccacccccactcaaagtactccatagaaagaactcaaatagcaaaat 104
           |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 245 cccacccctacccccacccccactcaaagtactccatagaaagaactcaaaaagcaaaat 304

                                                                       
Query: 105 agctgaactgtaagttaccaagtttggaactggagtcaatgttatgaatcccttttcaat 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agctgaactgtaagttaccaagtttggaactggagtcaatgttatgaatcccttttcaat 364

                                                                       
Query: 165 atggcagacctatgttgaaagagactgaagttttaggacagaaatacatattgcataaac 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atggcagacctatgttgaaagagactgaagttttaggacagaaatacatattgcataaac 424

                                                                       
Query: 225 tagctgcagttaagtgtggtgtttctggtgccacctattggtcattctataagattgaac 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tagctgcagttaagtgtggtgtttctggtgccacctattggtcattctataagattgaac 484

                                                                       
Query: 285 tatgtggcagtatcatataatataaatgaatagaaaatatgatttatggtgtaacattca 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tatgtggcagtatcatataatataaatgaatagaaaatatgatttatggtgtaacattca 544

                                                                       
Query: 345 aagttatatatttcaataggccagaagaatacagaaatagagtgctgtgtttggatatca 404
           |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 545 aagttatatatttcaataggtcagaagaatacaaaaatagagtgctgtgtttggatatca 604

                                                                       
Query: 405 actttggttgtagctactataaaccatgagactgtttggttttataatttttacctctat 464
           ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| |||
Sbjct: 605 actttggttgtagctacgataaaccatgagactgttttgttatataatttttacctttat 664

                 
Query: 465 ttactc 470
           ||||||
Sbjct: 665 ttactc 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no361_a20.g1 MSMg01no361_a20.g1 CHROMAT_FILE:
MSMg01no361_a20.g1 PHD_FILE: MSMg01no361_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:58 2005
         (433 letters)



>mm_chr7_96707733_96708565
          Length = 833

 Score =  777 bits (402), Expect = 0.0
 Identities = 423/430 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatctcgtgactaataatttatcattctaactggagaccttttgggcatttggctagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ctatctcgtgactaataatttatcattctaactggagaccttttgggcatttggctagac 571

                                                                       
Query: 61  actgggtcctttcctcatacttcaaatctaaaagggaatcttagctgtggatgagctagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 570 actgggtcctttcctcatacttcaaatctaaaagggaatcttagctgtggacgagctagg 511

                                                                       
Query: 121 gcttcaggaaattctggctgcatctgctgatttgtaagaaaactagagagtttattatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 510 gcttcaggaaattctggctgcatctgctgatttgtaagaaaactagacagtttattatga 451

                                                                       
Query: 181 gggtgaagagagggtagatgctgtttactagtagaatttcaacataatatacacagatta 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 450 gggtgaagagagggtagatgctgtttactagcagaatttcaacataatatacacagatta 391

                                                                       
Query: 241 tcagttatgaggcgactttgtgaaagagaactacaaattcttctgtgaccaaatcaaaca 300
           |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 390 tcagttatgaggcgactttgtgaaagagaactacgaattcttttgtgaccaaatcaaaca 331

                                                                       
Query: 301 tcagaagaaaataaccttgccagctttcaggcacacataggtcagcgctacagggcaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 330 tcagaagaaaataaccttgccagctttcaggcacacataggtcagagctacagggcaggc 271

                                                                       
Query: 361 cacacgtccaggtttacttcattagatgataataggccatagcctaagtcaggcttagct 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cacacgtccagatttacttcattagatgataataggccatagcctaagtcaggcttagct 211

                     
Query: 421 gtagagctgg 430
           ||||||||||
Sbjct: 210 gtagagctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)