BAC Information

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BAC

Clone NameMSMg01-362L23
Chromosome7 (Build37)
Map Location 61,845,078 - 61,845,590
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668789, Mrps33p
Downstream geneLOC622146, Luzp2, LOC668796
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362L23.T7 (MSMg01no362_l23.b1)MSMg01-362L23.TJ (MSMg01no362_l23.g1)
ACCAG471359AG471360
length756765
length of high quality
(start - end)		517 (52 - 568)447 (86 - 532)
definitionCHROMAT_FILE: MSMg01no362_l23.b1 PHD_FILE: MSMg01no362_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:13 2005CHROMAT_FILE: MSMg01no362_l23.g1 PHD_FILE: MSMg01no362_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTTAAGGGTGAGACCATAAGAGTGCTACTGGATCCCAT
GGCCTGTCAAAGAAGAGTATGGACTTTTCCACCATCAGGGAATCTTAGGA
ATCTAAGAGAGGCTGTTTCATCCATCATCTCCTTTGAGCTTTGAAGCATG
GGACCAAAGATTCCTGTTGGTGACCTGGACTTACTTCCTGAGAGATGTCA
ATCAAACTGTAGTTTGGATTCTGCTAGATTTACTCTTAAAGGCACATTTA
AAGGTCTTTTAGAATTGTAGTTGCTGTTAAGAGGTTTTTTGAAATTATTA
GCAGCATAATGAGTTCTAACTTTGCAAATACAATTTAGCTTTACAAATAA
AGTGGTTATAGCTGTGGTAGTTTGAAGATCCCTGCAGAATAATTGTGTAG
AGATTCTTCTTAAGTCTCCTTTAAATTATTTGAATAACAGTGCCAGGTTT
ATGCAATGTTTATGATGTTTATAATGTGATGACATACCTTCCAGTAATCA
TAAACATCCTGAAATATTGGTAGTGAGTGTCGCCAAGTAAAAGAGATGAG
GCTCTCGAAAGTTAAACAATGTGCGTAAAAGAAATTTTATTTCTTCAGAT
ATAATTGTCATATCCGAAGCTTACTGGGGGAGAAACTCCATATTTCTACC
ACTGAATGAATGGGGTCACTCCATCTGGTCGGGCCAAAATTCTCTCCCAA
TTGAAN

NNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATTAGATGTACATG
CTGAGGTAAGTAAGTCCCATGCTGAGGCAAGGCACATAGAGGAAGTGTGA
TGCTTGGAGGGTAGAAATAGGACTCCATGGAGTAATTAGACAGAGCTTGG
CTTGCTGGTATAGCTAGGTGTCCGATGTGTGCGAGTATTGTATCTTTGAT
GGCCATCGCTTCCCTGAGAAAGGAACAGTTGAGAACTTCTGGGTGTTCCT
GTTGGTCCCTCCTGCTGATTCAACTGGAAGCTTGGGGCTGGCTGTCTCTG
CTAGGTTGTATAACCTTTGTTGCTAACCTGACTCTACCCGACTCTGCTGG
TGTATTCTTGAAGTGTTTATGCGTGGATCAAACTGCCACTGGCTGGTAAC
ATGTGAACTGAACTGCCAATTTCCAAACAATACCGAGAGGAGTTGCTCCA
AAGAACCTTTCTAATCAGGTCCACTTCCCTGTATCTGTTTTTTTCCACTA
CCTCTGATGGGTGTGGGCTACTAGAGAGGTTAAAGTGTTTAAAAACATCT
TTTAAAAACCGGATTTGTAAGAGTTTAAGGTACCCCCTTCCCCATTTACT
GAGGACTATTGGGGCTGGCCCTCGAAAAAACGAAAGGAGCTTACCCCTAA
CAAAATTCCTTTTACCACTCCCTATCCCGAAAAGGGCCGGAAAAACTTAA
CCCCTTGGACCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_l23.b1 MSMg01no362_l23.b1 CHROMAT_FILE:
MSMg01no362_l23.b1 PHD_FILE: MSMg01no362_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:13 2005
         (517 letters)



>mm_chr7_61844874_61845790
          Length = 917

 Score =  969 bits (501), Expect = 0.0
 Identities = 510/513 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttaagggtgagaccataagagtgctactggatcccatggcctgtcaaagaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gaattcagttaagggtgagaccataagagtgctactggatcccatggcctgtcaaagaag 658

                                                                       
Query: 65  agtatggacttttccaccatcagggaatcttaggaatctaagagaggctgtttcatccat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 agtatggacttttccaccatcagggaatcttaggaatctaagagaggctgtttcatccat 598

                                                                       
Query: 125 catctcctttgagctttgaagcatgggaccaaagattcctgttggtgacctggacttact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 catctcctttgagctttgaagcatgggaccaaagattcctgttggtgacctggacttact 538

                                                                       
Query: 185 tcctgagagatgtcaatcaaactgtagtttggattctgctagatttactcttaaaggcac 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 537 tcctgagagatgtcaatcaaactgtagtttggatcctgctagatttactcttaaaggcac 478

                                                                       
Query: 245 atttaaaggtcttttagaattgtagttgctgttaagaggttttttgaaattattagcagc 304
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ctttaaaggtcttttagaattgtagttgctgttaagaggttttttgaaattattagcagc 418

                                                                       
Query: 305 ataatgagttctaactttgcaaatacaatttagctttacaaataaagtggttatagctgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ataatgagttctaactttgcaaatacaatttagctttacaaataaagtggttatagctgt 358

                                                                       
Query: 365 ggtagtttgaagatccctgcagaataattgtgtagagattcttcttaagtctcctttaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ggtagtttgaagatccctgcagaataattgtgtagagattcttcttaagtctcctttaaa 298

                                                                       
Query: 425 ttatttgaataacagtgccaggtttatgcaatgtttatgatgtttataatgtgatgacat 484
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttatttgaataacagtgccagatttatgcaatgtttatgatgtttataatgtgatgacat 238

                                            
Query: 485 accttccagtaatcataaacatcctgaaatatt 517
           |||||||||||||||||||||||||||||||||
Sbjct: 237 accttccagtaatcataaacatcctgaaatatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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