XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGATCCGCGGAATTCAA
ACCTGTTCTTGTGACTTATTTGCTGATCAGCAAGTAAAGATTATTAAAAT
CCCCTGAACCACACTTTCCTCATCTGTAAGTTATACAGAGAGTGATTTCT
ACACGTTGGTGACCAGAGTGTTTGGGGAGTAACGGCACAGTGTGCAAAGC
CCTAGCCCTAGTCCCCACCACTGCTCCCAGTACCAGAACAGTAGATGAAC
AGAAGCATCTTGTTAAAGCACAGCTTTCTAAGAAGCATGATCTGACGCTG
GAGTAAGTAGGCATGTTTCTTTTGAATCTGCACTTCCAATCAGCATCCAC
TGATGCTGGTATACTGTACCCAGGAAGTACTATAGCAATGACACTAGTTA
GCGCTACTATCTCCTCAAGGAGAGAAGTATCCAACATCCTAGGCTACAGT
AATTTTTCAACCAATATCTGTTGAATGAACAATTCTTTCTCAAGGACTTT
ACTTGTTTTGATGGCCTATGCCTTGGACTTGTTTGTGATTCTATATTAAA
ATGCCATTTTAATGCTTAGCTCATAAACCAAAGAAATGCATTTATTGTTC
TCGAGGCTGAGATGTCCAAGATCAAGGTCTCAGCAGATTCTGCATCTCAT
AACATCTTATTTCCTATCTCAAGATGGAACCGTCTGGCTGTGATGTCCCA
GGGTGGAAAGAACAACATAGCTCTCCAGACGGGTTCTATAAAAACATTA

NNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAGGTCCTGAGAACT
GTAGGTCTATCAGGTTGCTGGAGGAGAAAGGAGGAATAAATTATGTTCCA
GATGAAGTGGAAATGTCTGCTTGTATCACGTGGTGCAGATTCGTGTGATA
TTTTGCTGAAGCAGAGCAGTGAGAGGACATGTGATGTTTCGAGAGAGTAT
AGGTAGGACCCAACAGACAGGGGTGGGCCGCTTGCATAGCTAGCCATGCA
ATGACTCATTGTTCTTGCATCTTTTTTGTATCTTCACTTTGTTGAGAAAG
GCACAGCCAAAACTGTCTCCTGGCATTCTGGCTGATTCTGGTCACTCCCA
TTAACTGGTGCTGATTCAACAGAGGAGGCCTAGCTGTTTCTGCTGGATCG
TGCCGCCTCTGCTGATTCGTGTTTTGTGACAATTTTTGAGCTAGACTGTT
GGTATCCTGACACTACTGAACTGAACTGCTGGTATCCTGACAATGGAGAT
TGGAGTTGGCCCAAAGAATTATTTCTAAATAGGTCTATATCCCAATGATC
CTATTTACCATATTTTCTCTCCTACCTTTGGAGGGTGGGCTGAAGGGGGA
TCATTCATTTGAGAACCCTTATTAAAAGAAGTTTTGAAAATCTAACCCTA
CTCCTGAAGGCTTGGCCCTGAATCTGAACTCCTTTTTAGATCCTGATACC
AG

Query= MSMg01no363_m10.b1 MSMg01no363_m10.b1 CHROMAT_FILE:
MSMg01no363_m10.b1 PHD_FILE: MSMg01no363_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:36 2005
         (254 letters)



>mm_chr7_131353459_131354112
          Length = 654

 Score =  460 bits (238), Expect = e-134
 Identities = 250/254 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacttatttgctgatcagcaagtaaagattattaaaatcccctgaaccacactttcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tgacttatttgctgatcagcaagtaaagattattaaaatcccctgaaccacactttcctc 395

                                                                       
Query: 61  atctgtaagttatacagagagtgatttctacacgttggtgaccagagtgtttggggagta 120
           | ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 394 acctgtaagttatacagagagtgatttctacacattggtgaccggagtgtttggggagta 335

                                                                       
Query: 121 acggcacagtgtgcaaagccctagccctagtccccaccactgctcccagtaccagaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 acggcacagtgtgcaaagccctagccctagtccccaccactgctcccagtaccagaacag 275

                                                                       
Query: 181 tagatgaacagaagcatcttgttaaagcacagctttctaagaagcatgatctgacgctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tagatgaacagaagcatcttgttaaagcacagctttctaagaagcatgatctgacgctgg 215

                         
Query: 241 agtaagtaggcatg 254
           ||||||||| ||||
Sbjct: 214 agtaagtagacatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no363_m10.g1 MSMg01no363_m10.g1 CHROMAT_FILE:
MSMg01no363_m10.g1 PHD_FILE: MSMg01no363_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:36 2005
         (240 letters)



>mm_chr8_91618543_91619182
          Length = 640

 Score =  464 bits (240), Expect = e-135
 Identities = 240/240 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagaggtcctgagaactgtaggtctatcaggttgctggaggagaaaggaggaataaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agagaggtcctgagaactgtaggtctatcaggttgctggaggagaaaggaggaataaatt 255

                                                                       
Query: 61  atgttccagatgaagtggaaatgtctgcttgtatcacgtggtgcagattcgtgtgatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 atgttccagatgaagtggaaatgtctgcttgtatcacgtggtgcagattcgtgtgatatt 195

                                                                       
Query: 121 ttgctgaagcagagcagtgagaggacatgtgatgtttcgagagagtataggtaggaccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ttgctgaagcagagcagtgagaggacatgtgatgtttcgagagagtataggtaggaccca 135

                                                                       
Query: 181 acagacaggggtgggccgcttgcatagctagccatgcaatgactcattgttcttgcatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 acagacaggggtgggccgcttgcatagctagccatgcaatgactcattgttcttgcatct 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)