BAC Information

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BAC

Clone NameMSMg01-364K06
Chromosome7 (Build37)
Map Location 70,312,992 - 70,494,374
singlet/doubletdoublet
Overlap geneChrna7
Upstream geneNdn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251
Downstream geneOtud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik, Trpm1, BB128963, Mtmr15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364K06.T7 (MSMg01no364_k06.b1)MSMg01-364K06.TJ (MSMg01no364_k06.g1)
ACCAG472788AG472789
length773779
length of high quality
(start - end)		519 (45 - 563)513 (74 - 586)
definitionCHROMAT_FILE: MSMg01no364_k06.b1 PHD_FILE: MSMg01no364_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:49 2005CHROMAT_FILE: MSMg01no364_k06.g1 PHD_FILE: MSMg01no364_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,493,952 - 70,494,374)(70,312,992 - 70,313,504)
sequence
NTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGAGGATCCGCGG
AATTCACCTGTGTCAACTTTGCTGGGATTACGGATATGCAATACCATATC
TAGCTTACGTGAGTAGGTTCTGGGAATTGAATCAGCGCCAGACCACGCAT
GGCGAGTGCTTTGCTCACCAAAACATCTCCCTTATAAGTGTTGTTTTTGT
GTATGTGACCCCATTTTATTACTTTCTTTTTACTATATTAAAAAATAGGC
CATGGGTTTGAAGGGGAGCAAGGAAGGCCTTGGAGGGAAGAGAGAAATGG
AGGAAATGATATAATCATATAATCTCAAAAATAAATAAAAGAAATAATGA
CTTTAAAAAGTCACTTTTAGTGGTTTATCTGAATATTACAGATAGCTAAT
TAGAGCAAAAAGCAGCAGTTTGGCCCCAACAAAGCTATATTCCCCTGCTG
TTCTATGCTACTTTTAATATTTAAATGATCTCTAAGCAACGGGAGCCTTG
TATCCCACCCATTAACCCATCATTGTGCATAGATATATGATCAAATGCAA
TAATAATATAAAATACTTTATGTAAGTGCATTTAAATAAGAAAGAGCACT
TTCCTTAAAGTGGTCTATATTATGTAATTTTCTTTACATGGGCCCTTCTT
TGTGAATAGACCACAAATCACTGCTTGGTCCTGGCCTCTGTAAACTGGGT
ATGGGGCTGGGCTCTATTAAACGGTACAGTGTCTTGAATGCAAAAACATG
CACTAACCTCTCCATACCTTTTT

NCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGATTCTATTTTTAACTACCAGAGC
CAATCCCGCATTGCTTGAGAGTACTGTTTTTCAGGAGTGATTCCGAGGAA
AAGGCTTAAGGGATTTTTAAAAATCAAAGCAGAATATAACAGAGATTTTT
TTTTCTGCCTTTCCCTACTGATCAGTGTTCAATCCCTTGCTGACATCATC
CCACCCCAGAGAAAGCACAAGAAAGCAAACTGGAAACCTGGCCAATCAGG
CTGATTCCTTCAGGCTGGATAATTGTAAATACACAGAGGCAGGTGTCTCC
TGAGCTTAGGTCCTTGAGCCGGGCAATGATGACAATGGGCTGTCTTTTCC
CAGCCCCACTGTGAATCTCACTTTCCATACTGAAAGGGAACATGACATAT
AGCCAAGACACGGCTCCCACCTTATTGCCCACCTCCCCAAAGATGCCCTT
CTCAGGAGTCAGGTGAATCCAAGGTACACTTCCATCTGCACGAACAGGCT
CTTTTCATTAGGAGAAGCCTTTTCCTTTCTCCTACAAGGAATGAAGACAA
GTANGCTCTGGGAGCAGTACCTAACAGAAAAAAGAGCAGCCTTGGGGGTA
AACAAAGTTGGGAGGTAATGTGGATAAAAAACTGGAAGGGAGAGAGGCCA
AAAAAGGAATTCTGCTCCGAACGCCCCAAAAATGGGAGCAAAGGTTTTGG
AAAAATAACCTCTATGCGTATCATCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_k06.b1 MSMg01no364_k06.b1 CHROMAT_FILE:
MSMg01no364_k06.b1 PHD_FILE: MSMg01no364_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:49 2005
         (519 letters)



>mm_chr7_70493456_70494374
          Length = 919

 Score =  795 bits (411), Expect = 0.0
 Identities = 420/423 (99%)
 Strand = Plus / Minus

                                                                       
Query: 97  gaccacgcatggcgagtgctttgctcaccaaaacatctcccttataagtgttgtttttgt 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 gaccacgcatggcgagtgctttgctcaccaaaacatctcccttataagtgttgtttttgt 860

                                                                       
Query: 157 gtatgtgaccccattttattactttctttttactatattaaaaaataggccatgggtttg 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 859 gtatgtgaccccattttattactttctttttactatattaaaaaataggccatggatttg 800

                                                                       
Query: 217 aaggggagcaaggaaggccttggagggaagagagaaatggaggaaatgatataatcatat 276
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 aaggggagcaaggaaggccttggagggaagagagaaatggaggaaatgatataatcatat 740

                                                                       
Query: 277 aatctcaaaaataaataaaagaaataatgactttaaaaagtcacttttagtggtttatct 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aatctcaaaaataaataaaagaaataatgactttaaaaagtcacttttagtggtttatct 680

                                                                       
Query: 337 gaatattacagatagctaattagagcaaaaagcagcagtttggccccaacaaagctatat 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaatattacagatagctaattagagcaaaaagcagcagtttggccccaacaaagctatat 620

                                                                       
Query: 397 tcccctgctgttctatgctacttttaatatttaaatgatctctaagcaacgggagccttg 456
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 619 tcccctgctgttctatgctacttttaatatttaaatgatctctaagcaacaggagccttg 560

                                                                       
Query: 457 tatcccacccattaacccatcattgtgcatagatatatgatcaaatgcaataataatata 516
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 559 tatcccacccattaacccatcattgtgcataaatatatgatcaaatgcaataataatata 500

              
Query: 517 aaa 519
           |||
Sbjct: 499 aaa 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no364_k06.g1 MSMg01no364_k06.g1 CHROMAT_FILE:
MSMg01no364_k06.g1 PHD_FILE: MSMg01no364_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:49 2005
         (513 letters)



>mm_chr7_70312792_70313704
          Length = 913

 Score =  977 bits (505), Expect = 0.0
 Identities = 511/513 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgattctatttttaactaccagagccaatcccgcattgcttgagagtactgtttttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgattctatttttaactaccagagccaatcccgcattgcttgagagtactgtttttca 260

                                                                       
Query: 61  ggagtgattccgaggaaaaggcttaagggatttttaaaaatcaaagcagaatataacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagtgattccgaggaaaaggcttaagggatttttaaaaatcaaagcagaatataacaga 320

                                                                       
Query: 121 gatttttttttctgcctttccctactgatcagtgttcaatcccttgctgacatcatccca 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 gatttttttttctgcctttccctacttatcagtgttcaatcccttgctgacatcatccca 380

                                                                       
Query: 181 ccccagagaaagcacaagaaagcaaactggaaacctggccaatcaggctgattccttcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccagagaaagcacaagaaagcaaactggaaacctggccaatcaggctgattccttcag 440

                                                                       
Query: 241 gctggataattgtaaatacacagaggcaggtgtctcctgagcttaggtccttgagccggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctggataattgtaaatacacagaggcaggtgtctcctgagcttaggtccttgagccggg 500

                                                                       
Query: 301 caatgatgacaatgggctgtcttttcccagccccactgtgaatctcactttccatactga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caatgatgacaatgggctgtcttttcccagccccactgtgaatctcactttccatactga 560

                                                                       
Query: 361 aagggaacatgacatatagccaagacacggctcccaccttattgcccacctccccaaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagggaacatgacatatagccaagacacggctcccaccttattgcccacctccccaaaga 620

                                                                       
Query: 421 tgcccttctcaggagtcaggtgaatccaaggtacacttccatctgcacgaacaggctctt 480
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccccttctcaggagtcaggtgaatccaaggtacacttccatctgcacgaacaggctctt 680

                                            
Query: 481 ttcattaggagaagccttttcctttctcctaca 513
           |||||||||||||||||||||||||||||||||
Sbjct: 681 ttcattaggagaagccttttcctttctcctaca 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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