BAC Information

Click to search

BAC

Clone NameMSMg01-364N03
Chromosome7 (Build37)
Map Location 27,264,018 - 27,264,504
singlet/doubletsinglet
Overlap genenone
Upstream geneCeacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a
Downstream geneNlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364N03.T7 (MSMg01no364_n03.b1)MSMg01-364N03.TJ (MSMg01no364_n03.g1)
ACCAG472924AG472925
length765765
length of high quality
(start - end)		489 (49 - 537)506 (78 - 583)
definitionCHROMAT_FILE: MSMg01no364_n03.b1 PHD_FILE: MSMg01no364_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:04 2005CHROMAT_FILE: MSMg01no364_n03.g1 PHD_FILE: MSMg01no364_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTACATCCTGTTCCAAAGACAAATAGGAGAAGACTGTCTCCAG
GCAGCTAGGAGAAAGGCCTCAACGCCCACCCTCACAGTGACATTTCCTCC
AACAAGGCCTAATAGTGCCACTTCCTGGGCCAAGCATATTCAAACCCCTA
CGGCAGGTATGTCATGGCTCTGGCATCTCTAACATCTTGGTGTCTCCAAG
GCAACATCAATTTCACAGCTTCTTGCTCCAATGTCTGGAATCTACACATG
ATCTTCTGGGTTCCTCTAAAGAGCTTAAGTCACATCTCTAGCTCTGCCCT
CTGGAGTAGTCCAGGGTCTGGTTGACTCCACTCTACTGCTGCTGCTGTTC
TTGGTTTTCATCCCATGGTGCTGGCATCTCCAAAACACTGATGTCACTGT
AACTAGGCTTCACCAATAGCTTCTCAGAGGCTCTCTTCATGGTGCCAAGC
CACAACTCTTTTGCATGACCCCTTCAGTCCTGTGCCATTAATTGCAACTG
AGGCTGCACCTTCACCAATGGTCTTCCATGGCTTCTTATACTGGCCAACC
TCACTTGGTCTCCATGACCCCTTTATGCCTTCAAAAACAGTACTATTTGG
CTGATTCCTAAACATTTCCACGCTAGTCTGCCAGCTTCAAATCCCCCCCG
GAAAAAACCCTTCTTGTTGCTTTTACAAAAAAATTCCCAAAATTTCCCCT
CGTGTAGCTGTACTC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGGGAACCCAGGGTATAAGA
TGGCCTTGAAGAGAAACATAATATATTCTGATAAAAAGAGTATGTTTATT
TATATACACAAACATACAAAACCACAGCCACACCACCTAAGTAAGTGCCA
TTTTTGTCTGGTTAATATTTTTGGGACTCTCTATGTAGTCTTGACTATTC
TGGAGCTCACTACATGAACCAGGGTGAGATTGAACTTAGAGAGATCTATA
TGCCTCTGTCTCCTGAGTACTAGGAATAAATGAATGTATGAGCACATCAA
CTTCTATATATGCAACATACAAAAGAAACATGCATATGTTTGATAAATAA
GGTCAACACATCCCTATGGTCTAGACTAGCAGAAACGATCTGAAGATATA
TATCAAGTTTCTTTGCAACTATATTTCTGGTTTTAAGTTTTATTTTGATG
GTAAGGGATCTGCAGTTCAAAAATTTAAAGCTCAATCATATGTTGTTCCT
TATTTTAAAATATTTTTAAATCTGCTTTTGAACATTTANGAGATGCATAA
GTGGGTAGACAAATATCTCTTCTTTGCACAATCATTCCTGGAACTTGCGG
GGGTTCATAATACGGAGGGGATTTCATTACTTTTTCCCCATAGTAATCTG
GTTTAACCATTTCTACCTTTTGGTGGTTTTCCAGAAACGTTTTAAACTCT
TTTTTCTAACCAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_n03.g1 MSMg01no364_n03.g1 CHROMAT_FILE:
MSMg01no364_n03.g1 PHD_FILE: MSMg01no364_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:05 2005
         (506 letters)



>mm_chr7_27263599_27264504
          Length = 906

 Score =  911 bits (471), Expect = 0.0
 Identities = 483/487 (99%)
 Strand = Plus / Minus

                                                                       
Query: 20  aagatggccttgaagagaaacataatatattctgataaaaagagtatgtttatttatata 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 aagatggccttgaagagaaacataatatattctgataaaaagagtatgtttatttatata 847

                                                                       
Query: 80  cacaaacatacaaaaccacagccacaccacctaagtaagtgccatttttgtctggttaat 139
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 846 cacaaacatacaaaaccacagccacaccacctaagtaagtgccatttgtgtctggttaat 787

                                                                       
Query: 140 atttttgggactctctatgtagtcttgactattctggagctcactacatgaaccagggtg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 atttttgggactctctatgtagtcttgactattctggagctcactacatgaaccagggtg 727

                                                                       
Query: 200 agattgaacttagagagatctatatgcctctgtctcctgagtactaggaataaatgaatg 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 agattgaacttagagagatctatatgcctctgtctcctgagtactaggaataaatgaatg 667

                                                                       
Query: 260 tatgagcacatcaacttctatatatgcaacatacaaaagaaacatgcatatgtttgataa 319
           |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 666 tatgagcacatcaacttctacatatgcaacatacaaaagaaacatgcatatatttgataa 607

                                                                       
Query: 320 ataaggtcaacacatccctatggtctagactagcagaaacgatctgaagatatatatcaa 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ataaggtcaacacatccctatggtctagactagcagaaacgatctgaagatatatatcaa 547

                                                                       
Query: 380 gtttctttgcaactatatttctggttttaagttttattttgatggtaagggatctgcagt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gtttctttgcaactatatttctggttttaagttttattttgatggtaagggatctgcagt 487

                                                                       
Query: 440 tcaaaaatttaaagctcaatcatatgttgttccttattttaaaatatttttaaatctgct 499
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 486 tcaaaaatttaaagctcaatcatatgttgttccttattttaaaatattttaaaatctgct 427

                  
Query: 500 tttgaac 506
           |||||||
Sbjct: 426 tttgaac 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |