BAC Information

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BAC

Clone NameMSMg01-365B02
Chromosome7 (Build37)
Map Location 17,592,991 - 17,593,153
singlet/doubletsinglet
Overlap genePpp5c
Upstream geneZfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130
Downstream geneHif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852, Ceacam11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365B02.T7 (MSMg01no365_b02.b1)MSMg01-365B02.TJ (MSMg01no365_b02.g1)
ACCAG473113AG473114
length638732
length of high quality
(start - end)
167 (83 - 249)598 (56 - 653)
definitionCHROMAT_FILE: MSMg01no365_b02.b1 PHD_FILE: MSMg01no365_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:28 2005CHROMAT_FILE: MSMg01no365_b02.g1 PHD_FILE: MSMg01no365_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTCCCCCCTTTCTGNNNNNGGANNNNNNNNNNNNNNTNTTXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCAAGTG
CGTGGCTATACTACTCTAGGCTTTACAGATGAAGACAGAAGCCCAGGAGA
GAAGGAGAAACCCGCCTCACCTCGAAGTAGATGGAAATGATCTGGATACA
GGAGCTTANAGCCGAAGAGGGTGAGGATCACTTCAACGGAGAAGGAACCA
CGGTCCACAAAAGTCGCCCATTTAAATAATCTTTTCTTGGTTAAAGAACC
TGGGGNTCAAATGCCAAAAGGGCCCNNAAGGCGCAANCCTTGTTCCCTGG
GTTCCAAGGTTTCCTTTTCAAAGGGGGGGGGAATCCCGGGGCGGGCTTTT
AAACGGGACCCCCCAGGGAAACACTCCCCTGTGTTTTTGAAAAAAAATGG
GTAAAAAACTATAGGCCCCCCCTTGTTCCCCAAAAAAAGCGCTTCCCTTA
TATGGGGGGGGGGGGGGGTCCTTTTTTTCCCAAAGGGAAAGAATTCCGAA
AACTCCCCCTCCAAAAAATTTCATCCCCTGGGTGAAAATGGGGGGGAAAA
AATACCGCGGGGGGGGTGTGTCTCTCAGGGGGAAAAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTCATATTTGGAAAAGCAATGAAGAATATGTTAAATTTTTTTAGA
GTTTTTTTTTTTAAGTTTTTTGGAGACATAGTCTTCTATAGAGCAGACCA
ACATTAAATTCACTTTGTAGCTGAGACTCTGACCCTCTTGCCTCCACCTC
TGAAGTCTTGGGATCACAGGCAGTGGCAACAAGTTCTGTTTTGTTTTGTC
TTGTTGAGACAGGGTCTCCTAGTGGTAGCTCAAGATGGCCTCTAACTCTC
AAACTTCCTGCCTCAGCCTCCCAAGTGTTGGAATGTATGTTGGCTCCACT
GCTCCAGGCTTTTAGTTTCATTTCAACAACATTACAGGAGCTAGGGACAT
AGCTCAGTGGAGGAGAGTTTGCCTGGCATGCAAGAGGTCCTAGGTTCAAA
CCCCCAGCACAGTAAACAAACAGACTAATCAGTCAATCTATCAATGCCAT
TACAGGTTGAGTCCCCCTTATCCTAAGTGTTTGGGGCCAAAAGCATTTCA
GAAGGGCTGGGGATGTAGCTCAGTCAGTAGAATATTTACCTAGCATGCCT
GAAGCCTGGGATTCCATCCTCAGACCCCATAAACTGAGCATGGTGGCATG
TGCCTGTAATCCCGGCACTCAGGAGAATCAGATTAAGGCATTCATGGCTA
CATAATGAGTCTGAGGTCAGCCTGGGCTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_b02.b1 MSMg01no365_b02.b1 CHROMAT_FILE:
MSMg01no365_b02.b1 PHD_FILE: MSMg01no365_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:28 2005
         (167 letters)



>mm_chr7_17592787_17593353
          Length = 567

 Score =  302 bits (156), Expect = 9e-87
 Identities = 161/163 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccaagtgcgtggctatactactctaggctttacagatgaagacagaagcccag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccaagtgcgtggctatactactctaggctttacagatgaagacagaagcccag 264

                                                                       
Query: 65  gagagaaggagaaacccgcctcacctcgaagtagatggaaatgatctggatacaggagct 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagagaaggagaaaccctcctcacctcgaagtagatggaaatgatctggatacaggagct 324

                                                      
Query: 125 tanagccgaagagggtgaggatcacttcaacggagaaggaacc 167
           || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaagccgaagagggtgaggatcacttcaacggagaaggaacc 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)