BAC Information

Click to search

BAC

Clone NameMSMg01-365N01
Chromosome7 (Build37)
Map Location 104,434,282 - 104,434,588
singlet/doubletsinglet
Overlap geneGab2
Upstream geneOdz4, LOC670727, LOC666858, Nars2, LOC100040457
Downstream geneUsp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365N01.T7 (MSMg01no365_n01.b1)MSMg01-365N01.TJ (MSMg01no365_n01.g1)
ACCAG473680AG473681
length760727
length of high quality
(start - end)
504 (43 - 546)426 (58 - 483)
definitionCHROMAT_FILE: MSMg01no365_n01.b1 PHD_FILE: MSMg01no365_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:25 2005CHROMAT_FILE: MSMg01no365_n01.g1 PHD_FILE: MSMg01no365_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAACTTATATTCAACTGTGTGTGCATCTACATATTAGTGTATTTTCTTG
GACTCACACTTCAGTGAGTGACTGTACTTATCTCTTTACCAATGCAGTAT
CCTATAGGTTACCAGAGTTTGGCAGGAAGTCTTGAAACCAGGTAGTTTAA
ATGCTTCATTGTTGTCCTTTTAGAAGATTAATATGGAGTGTTTAAATTTT
TTTCATTTTTACACATATTTTAGAACCAATCTAACAGTATCTATATAAAA
GCTTGTTAGAAGTTTTATTGTAGTGAACCTATAGATCATTCTGAAGAACT
GTCATTTTACTAATATTTGAGTTTCTAATTCATAACTATAGTATGTTTCT
TTTCTTATTTAGGCCTCTCATTTCTCTCACTAATGTCTTCACAATTCAGA
ACACAAGAAACAAAAAAAAGTAAGGCTATCGTGTTCCTCCAAATCATAAT
TCTTTAATTACCAAGACCAAAGAGTCAAATGGGTAAAATGCCAGATGAAG
AATACAAACATTTTCCTGTAAAAATAGTCAGTGACTTCAAAATGATACAA
ATAAGCAAATGCATGAAGTAAGGAAATCAGTTCAAGATCTAGAGACTTAT
CAGGAAATATAGACTGGAGCCGGGCAGGGTAATGAATAATACCGAGACAG
CCGGTACAAAAGATCTGCCAGAAACTTTTCCCCGAAAAAAAGAGAGAAAT
CTTCGATGTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTGTGCATGGGAAAGGGGAGCAAAGGAGCTTTAGTAAAATTG
TAGCATAGAAGCTGTCTCCTGGGAGGCTATGCCAGTACCTGGCAAATACA
GAAGTGGATGCTCACAGTCATCCATTGGACAGAGCACAGGGTCCCCAATG
AAGGAGCCAGAGAAATACCCAGGGAGCTGAAGGGGTCTGAAGCCCCATAG
GAGGAACATCAATATGAACTAACCAGTACCCCCAGAGCTCCTTGGAACTA
AACCACCAATCAAAGAAAGCACATGGTGGAACTTGTGGCTCTAGCTATAT
ATGTGGCAGAGGATGGCCTAGGCAGTCATCAATGGGAAGAGAGGCCCTTG
GTCCTGTGAAGGCTCTATGCCCCAGTATAGGGGAATGCCAGGACCAGGAA
TGGAGTGGGTGGGTAGGGGGATAGGGGGAGNNTTNTNNNNNTTNNTTTTT
TTTTTTTTTGTTTTTTTTTTTTTTTGGGTTTTTTTTTTGTGTTTTTTTGT
TTGTTTTGGTTTTTTTTTGTTGGTGTGTTTTTGTTTTTTTGTTTGTTTTT
TTTTTGTTGTTGTGTTTTGTTTTTTTGTTTTTTTGTTGTTTTTTGTTTTT
TTTTTTTTTTTTGTGTTTTTTTGGGTGTTGTTGTTTTTTGTGTTTTGTTT
TTTTTTTTGTTTGGGTGTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_n01.b1 MSMg01no365_n01.b1 CHROMAT_FILE:
MSMg01no365_n01.b1 PHD_FILE: MSMg01no365_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:25 2005
         (504 letters)



>mm_chr7_104433685_104434588
          Length = 904

 Score =  578 bits (299), Expect = e-169
 Identities = 305/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 198 gtttaaatttttttcatttttacacatattttagaaccaatctaacagtatctatataaa 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 gtttaaatttttttcatttttacacatattttagaaccaatctaacagtatctatataaa 845

                                                                       
Query: 258 agcttgttagaagttttattgtagtgaacctatagatcattctgaagaactgtcatttta 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 agcttgttagaagttttattgtagtgaacctatagatcattctgaagaactgtcatttta 785

                                                                       
Query: 318 ctaatatttgagtttctaattcataactatagtatgtttcttttcttatttaggcctctc 377
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ctaatatttgagtttttaattcataactatagtatgtttcttttcttatttaggcctctc 725

                                                                       
Query: 378 atttctctcactaatgtcttcacaattcagaacacaagaaacaaaaaaaagtaaggctat 437
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 724 atttctctcactaatgtcttcacaattcagaacacaagaaacaagaaaaagtaaggctat 665

                                                                       
Query: 438 cgtgttcctccaaatcataattctttaattaccaagaccaaagagtcaaatgggtaaaat 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cgtgttcctccaaatcataattctttaattaccaagaccaaagagtcaaatgggtaaaat 605

                  
Query: 498 gccagat 504
           |||||||
Sbjct: 604 gccagat 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)