BAC Information

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BAC

Clone NameMSMg01-367L07
Chromosome7 (Build37)
Map Location 123,880,913 - 123,881,173
singlet/doubletsinglet
Overlap genenone
Upstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485
Downstream geneLOC546993, LOC100043330, Xylt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367L07.T7 (MSMg01no367_l07.b1)MSMg01-367L07.TJ (MSMg01no367_l07.g1)
ACCAG475110AG475111
length812749
length of high quality
(start - end)		268 (53 - 320)457 (58 - 514)
definitionCHROMAT_FILE: MSMg01no367_l07.b1 PHD_FILE: MSMg01no367_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:57 2005CHROMAT_FILE: MSMg01no367_l07.g1 PHD_FILE: MSMg01no367_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATGTGTTCCCAGAACCAACCGTCACCCAAGGTTACAAA
TGAGTTATGAAACATATCCTCAGAAGGCACGTGTGGTGGAGGTGTGGCCT
CCAGTTCAATGTTCAGAGGTCAGACTTTGGGATGTCACTGAATCATGAGG
GCTGTGTCTAACTGATGGTATAATGCATTGATGGATTCATCATTGGGTAG
TTTTATTGGGAGGTAACGGAAAATGGGTAGAGTTTAGCTAGGAGAGGTGA
TGGGTGTTGTTTGAAGTNNTTGATTTCTTTTTTTTNGTGTTTTTTTTNNT
GTTTTGATGTTTTTTTTATTCTTTCTTGATGTTGTTTTGTCTGTTGCATC
GCCTGATTCGTCTCTGTATTCCCTCCCCCCCTTTTTCTTCTCTGACCCTT
TTCACCCCCTTCCTTTTCCTTTTCCTTCTTCACTCTTTTTATTTTTTTTT
CCCCCCCTTTTCTACTTTTCCCCTCTTTCCTTCTTCTTCCTTCTCCTTTC
CTTTCCCTTCTTTCCTTTTTTTTTCCCCTTTCTCTCCTCTTTTTTCTTTT
CCCTCCTTCCCTTCTTTTTCTCCCTTCCTTCTTTTCCCTCCTCCCCCCCC
TTTTTTTTTTTCTCTTTCCCCTTCTTTTTATTCTCTTTCCTTTCTCCCCC
CATTCCTTTTTTTTCCACCCTTTTTTTTTTTCTTTCCTCCTTTTTATTCT
CCTCCTCCCCCGTCCCCCTTTTTTTTTCTCTTTTCCTCTAACCCCATTTA
TTTTCCACTCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTGATTTGATTAAAATAATTTTAGGAAGAAAGTTTTTAGAGAT
AGTCTTAGTTGCTACAAAGAAGTAATAAAGTTAGAATTAAGAATAGAATA
TGCCCACTCCTCAAATAGTAAGTAAAGCCTGCATAATAAGAAATACAGTG
AACTTTCATAATTACACTAAAAACAGAAATAGACCTGGGGCAATTTTGTG
TTCAACGAAAAACATTTAGGTCCAAGGATAAAGTCACAGGTGTGCACTAT
GATAAGGCAAGGCCATGCCAAAACTGTTGCTTTAGATTTTTAATGAGCAT
ATTATAATGAAACACTGCTTTGAACTTAATATCAATATCCTGTAACTCCC
ATTCTATGTGACATTTTATCTTTGAGGTAATTCTCTAAAGAACTTTGTGT
CTAAGAAGGGATAAAAGACTAGAGAAAAGAAATAAAGTTGTTGGTTGAAT
GGTTTGACTTGGAGAGTTCTGCCCTATCCATCCATCCATCCATTCAAATA
TATATGTCTGTCTGTCTATGTTTACGGGTANATATATGTGTATATGTGTA
AACTTGGTTTGACACCTGGGGAGTTGATTTGGGCCAAAGGTTGGGTCCAC
CCAAAGGGGGGGGGGGGGGAAGGTTAAAAGTTTACTGGGCTGGTCTGCTG
GGAACTAGANACCTATTTTCTTTTCTTTTTCTTCTTTCCTGGTGCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_l07.b1 MSMg01no367_l07.b1 CHROMAT_FILE:
MSMg01no367_l07.b1 PHD_FILE: MSMg01no367_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:57 2005
         (268 letters)



>mm_chr7_123880710_123881376
          Length = 667

 Score =  476 bits (246), Expect = e-139
 Identities = 258/262 (98%), Gaps = 1/262 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatgtgttcccagaaccaaccgtcacccaaggttacaaatgagttatgaaacat 63
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ggaattcatgtg-ccccagaaccaaccgtcacccaaggttacaaatgagttatgaaacat 406

                                                                       
Query: 64  atcctcagaaggcacgtgtggtggaggtgtggcctccagttcaatgttcagaggtcagac 123
           |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 405 atcctcagaaagcacgtgtggtggaggtgtggcctccagttcaacgttcagaggtcagac 346

                                                                       
Query: 124 tttgggatgtcactgaatcatgagggctgtgtctaactgatggtataatgcattgatgga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tttgggatgtcactgaatcatgagggctgtgtctaactgatggtataatgcattgatgga 286

                                                                       
Query: 184 ttcatcattgggtagttttattgggaggtaacggaaaatgggtagagtttagctaggaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ttcatcattgggtagttttattgggaggtaacggaaaatgggtagagtttagctaggaga 226

                                 
Query: 244 ggtgatgggtgttgtttgaagt 265
           ||||||||||||||||||||||
Sbjct: 225 ggtgatgggtgttgtttgaagt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 667
Length adjustment: 9
Effective length of query: 259
Effective length of database: 658
Effective search space:   170422
Effective search space used:   170422
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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