BAC Information

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BAC

Clone NameMSMg01-367O14
Chromosome7 (Build37)
Map Location 10,722,606 - 10,723,160
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921
Downstream geneVmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367O14.T7 (MSMg01no367_o14.b1)MSMg01-367O14.TJ (MSMg01no367_o14.g1)
ACCAG475265AG475266
length723711
length of high quality
(start - end)
560 (55 - 614)512 (75 - 586)
definitionCHROMAT_FILE: MSMg01no367_o14.b1 PHD_FILE: MSMg01no367_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:12 2005CHROMAT_FILE: MSMg01no367_o14.g1 PHD_FILE: MSMg01no367_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCCTTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATTGATAACAAGGTACAGTTTACTTAAAATTAAGTA
ACAAAAAACTAGTGCTAAGAGAAAATTACATTGCACTGAGTACCTTCATA
AAGAAATTTGGGATCCTATATTAGCAACTTCGCAGTACACCTGATAATTT
TAGAAGAAAAGGAGCAATAAACAATAAATAGGAAATAATCTAACTCAGGT
CTGAAAACAATCAAGTAGAAAAATTGAGAATGAAAAAAAAAATCAAAAGG
GCTAAAGTCTGGTTCTTTGAGAAAATCAAGAATATAGATAAACCCTAAGG
CAAAGTAACTAAATTCACGGGGAGTCCTGACAGGTTTTAAGAAGTGAGCA
CATCATGTCCCACATCTCCCAACACTAGAGTCTCAATGATTCGCTGGAGC
CAACTTCATGCATGGTTCCAGGCACATCCTAAAAATGCCCCTATCCCACC
CTCCAAAGATTTTCTTTCTCCACTGCTCTCTTACATATGATCTCCCCAAA
ACATCCAATCTTATACTAAGCACTTTCCTCATGCACTATTGTGTGAGAGT
CAAACATACTCTCTTGGGCTCACCTTGTTATTTGTGTTGTGGACTACCTT
CTATTTATCCTGTATATTATGGCAAAGGGCCACTAATAAGCGAGAGCATA
AAATGCTTCACTGTTTTCACGTT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTAGTGAACTTTATTTAGCTTTCTT
TCTGTAAGGAAAAATTTATAATTCCTAAAACTTTGTCCTGGCTCAGAAGG
GCAATTCATGGAGAACTAGAGAGAAGAGATGAGAAAAGAGAAAGAAAGGA
AAATGCAAATATAGAGGAGATAAGCAAAGAGGAAAGGGGAATGAATGGAA
CAAAGGGAGAGAGAAGAAGATGAAAGAAAGGAGTGACAATAATCAATGTT
ATCCCTGTGAAATTATGCTCCTCATGTAGGCACAACTATAGCTTATATAT
ATACCCAGACATTGTCTGTAGTAGTTGCCTACTCTGCTCTAGTTGGGTTA
CATGTGCGCACCAGACCAGGAGCTATTTGGATTCAGGAATGAAACACACA
CACACACACGTACACACACACACACACACACACACACACACACACACACA
CACACACACACCCCACAACACAGAGAGAGAGGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGNNNNNNNCNNCG
GNNNTTNNNTGGNTGCNNNANNNNATTCNTTGCCTGGCATTCTGCTATTT
CCCCCTGTTATCAATCTTTCCTCCTGTCCTCCTGATACTTTAATCCTCCC
CTGTCACCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_o14.b1 MSMg01no367_o14.b1 CHROMAT_FILE:
MSMg01no367_o14.b1 PHD_FILE: MSMg01no367_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:12 2005
         (560 letters)



>mm_chr7_10722401_10723360
          Length = 960

 Score = 1029 bits (532), Expect = 0.0
 Identities = 550/556 (98%), Gaps = 1/556 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgataacaaggtacagtttacttaaaattaagtaacaaaaaactagtgctaa 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcattgaaaacaaggtacagtttacttaaaattaagtaacaaaaaactagtgctaa 265

                                                                       
Query: 65  gagaaaattacattgcactgagtaccttcataaagaaatttgggatcctatattagcaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gagaaaattacattgcactgagtaccttcataaagaaatttgggatcctatattagcaac 325

                                                                       
Query: 125 ttcgcagtacacctgataattttagaagaaaaggagcaataaacaataaataggaaataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttcgcagtacacctgataattttagaagaaaaggagcaataaacaataaataggaaataa 385

                                                                       
Query: 185 tctaactcaggtctgaaaacaatcaagtagaaaaattgagaatgaaaaaaaaaatcaaaa 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 386 tctaactcaggtctgaaaacaatcaagtagaaaagttgagaatgaaaaaaaaa-tcaaaa 444

                                                                       
Query: 245 gggctaaagtctggttctttgagaaaatcaagaatatagataaaccctaaggcaaagtaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggctaaagtctggttctttgagaaaatcaagaatatagataaaccctaaggcaaagtaa 504

                                                                       
Query: 305 ctaaattcacggggagtcctgacaggttttaagaagtgagcacatcatgtcccacatctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 ctaaattcacggggagtcctgacaggttttaagaagtgagcacatcaggtcccacatctc 564

                                                                       
Query: 365 ccaacactagagtctcaatgattcgctggagccaacttcatgcatggttccaggcacatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccaacactagagtctcaatgattcgctggagccaacttcatgcatggttccaggcacatc 624

                                                                       
Query: 425 ctaaaaatgcccctatcccaccctccaaagattttctttctccactgctctcttacatat 484
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 625 ctaaaaatgcccctattccaccctccaaagattttctttctccactgttctcttacatat 684

                                                                       
Query: 485 gatctccccaaaacatccaatcttatactaagcactttcctcatgcactattgtgtgaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gatctccccaaaacatccaatcttatactaagcactttcctcatgcactattgtgtgaga 744

                           
Query: 545 gtcaaacatactctct 560
           ||||||||||||||||
Sbjct: 745 gtcaaacatactctct 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)