Query= MSMg01no368_a07.b1 MSMg01no368_a07.b1 CHROMAT_FILE:
MSMg01no368_a07.b1 PHD_FILE: MSMg01no368_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:21 2005
(621 letters)
>mm_chr7_125010360_125011380
Length = 1021
Score = 717 bits (371), Expect = 0.0
Identities = 408/437 (93%), Gaps = 26/437 (5%)
Strand = Plus / Minus
Query: 211 gttgtctcatcgcttaagcaccaggaaggagagagcattgcgtgctagcgctcagctcat 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 gttgtctcatcgcttaagcaccaggaaggagagagcattgcgtgctagcgctcagctcat 962
Query: 271 tttctcctttgaaaattcagttca--------------------------gggcagctca 304
|||||||||||||||||||||||| ||||||||||
Sbjct: 961 tttctcctttgaaaattcagttcaggggatgggggtgggggtgggggtgggggcagctca 902
Query: 305 ggaacggagctgttcacacttagggtgggacttcttctcactttaatgaacacaatctag 364
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 901 ggaacggagctgttcacacttagggtgggacttcttctcactttagtgaacacagtctag 842
Query: 365 aaaacctcttgcagatacgctagatgtgactgttaataatttccaacctgacggaatctg 424
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 841 aaaacctcttgcagatacgctagatgtgactgttaataatttccaacctgacagaatctg 782
Query: 425 gaatctactggggcagacattcaacactgcaaagaagaaacagacagacagaagattggt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaatctactggggcagacattcaacactgcaaagaagaaacagacagacagaagattggt 722
Query: 485 agacctcacagacagtgatgagagtttaccatggcccagcatcctgtctcctctcttcga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 agacctcacagacagtgatgagagtttaccatggcccagcatcctgtctcctctcttcga 662
Query: 545 acagatgctccacacatcctctggggaaagattgcttctactctcagtccagataattca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 acagatgctccacacatcctctggggaaagattgcttctactctcagtccagataattca 602
Query: 605 actcctgcctctagctc 621
|||||||||||||||||
Sbjct: 601 actcctgcctctagctc 585
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_a07.g1 MSMg01no368_a07.g1 CHROMAT_FILE:
MSMg01no368_a07.g1 PHD_FILE: MSMg01no368_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:21 2005
(588 letters)
>mm_chr7_124840630_124841617
Length = 988
Score = 1075 bits (556), Expect = 0.0
Identities = 580/588 (98%)
Strand = Plus / Plus
Query: 1 actttatactccaagctagccttgaacctgtgagctttatgcctcagcctccctaggact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttatactccaagctagccttgaacctgtgagctttatgcctcagcctccctaggact 260
Query: 61 gagaaaaaaggctgctctgcaagaatctgctcaccataatcttgttatcctatgtctcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaaaaaaggctgctctgcaagaatctgctcaccataatcttgttatcctatgtctcac 320
Query: 121 gtagtatgagcaaggactcaaagtgaagggtgaggatcagattatctgagaaacatgcac 180
||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||
Sbjct: 321 gtagtatgagcaaggactcaaagagaagggtgaggatcagattgtttgagaaacatgcac 380
Query: 181 aagagctggtcccagaggtagattcctaggctccactcaagaccaatgaactaaagacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagctggtcccagaggtagattcctaggctccactcaagaccaatgaactaaagacta 440
Query: 241 tggtttgtcatctgagcacctgcattttaacaagcttccccaggtaactgtgatgtgtgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtttgtcatctgagcacctgcattttaacaagcttccccaggtaactgtgatgtgtgc 500
Query: 301 tcctttctgagacaggctcccataagaaacatgtagaggtatatttgaatttctctctgc 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctttctgagacaggctctcataagaaacatgtagaggtatatttgaatttctctctgc 560
Query: 361 cttcccagtgtctatcagagagagttacattacccagggaactcttcaaaggtaggtatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 cttcccagtgtctatcagagagagttacattacccagggaactcttcaaaggtgggtatt 620
Query: 421 tgcttcactgatgtagccctggtgcaaaatcctcagtggaattttgtctggcttgagctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcttcactgatgtagccctggtgcaaaatcctcagtggaattttgtctggcttgagctt 680
Query: 481 gcacaggtcttgcgcatactgttcaactgctatgagtcaatatttcatacaacttctggg 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 gcacaggtcttgcgcataccgttcaactgctatgagtcaatatttcatacaacttgtggg 740
Query: 541 ctgtgctccggaaaacattatttccacataatcatctactgcctctgg 588
|||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgtgccccggaaaacattatttccacataatcatctactgcctctgg 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
