BAC Information

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BAC

Clone NameMSMg01-368D08
Chromosome7 (Build37)
Map Location 65,958,823 - 65,959,289
singlet/doubletsinglet
Overlap geneAtp10a
Upstream geneGabrb3, EG668807, LOC434189
Downstream geneLOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a, LOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368D08.T7 (MSMg01no368_d08.b1)MSMg01-368D08.TJ (MSMg01no368_d08.g1)
ACCAG475490AG475491
length757752
length of high quality
(start - end)
566 (44 - 609)548 (67 - 614)
definitionCHROMAT_FILE: MSMg01no368_d08.b1 PHD_FILE: MSMg01no368_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:35 2005CHROMAT_FILE: MSMg01no368_d08.g1 PHD_FILE: MSMg01no368_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCTGACGCATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTC
AACAACCTTAATTATCAGGGAAATGCAAATCAAAACAATTCTGAGATTTC
ACCTCACACAAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TACTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAAGCTTGTAGAAGCACTCTGGAAATCAGTCTGGCAGTTCCCTAGAA
AATTAGACATAGTACTACAGGAGGATCCAGCAATACCTCTTCTGGGCATA
TATCCAGAAGATGTCCCAACCGGTATGAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAACTGGAAAGAACCCAGATGCC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAG
TACTACGCAGCTATTTAAAAAAATGAATTTATGAAATTCCTAGGCAAATG
GATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGA
ACTCACACAATATGTACTCATTGATAAGTGGATACTAGCCGAANACTTAG
TATATCCAAGATATAAGATACAATTTGCCAAATTTTAAGGATGAACCATC
TAGTGATTGCCATATCCAGTGATCCATTCCTTGATCAGCCTCCACAAGCT
GACACCN
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAATAAATGCTTCCTGGGACAATTCATTACATGAA
AGGGGAACTATAGGTATGAGACATGAAACCCAGGCCACGGCTCCTGTCTG
CAGTCCCAGTACTCAAGAGGCCAAAGCATCAGGATCAGAGAGATCCAGGC
TAACCTAGGTCTACTCAGTGAAGTCAAAGTTAGTCTGGACTACAGACCCT
ATTTCAGGATGGAATTGAAAGGGATGATGGCATTCACTTCATTGGTAGAG
CCCTTGCTTAGAATGTGCACGGTCCTATGTTCAATCACAAGCACTGTCGG
CGAAAGGTGACAAATTGAGATATGAAAAGAATAAGACAAGAAAACTGGGT
AGAGCTAGAAATGCATGAGTAGACATGAGGCTCTGCATCCAAAAAACCTC
TAGTAAGAGCCAGTGGGACCGCATAGCATCACAAGTTAGTGTCTGTCCGC
TTGACACAGCCCAAAGTTACCTTAGAGTGTGTTAGTGTGGGGATTGACTG
GATAATACTGGCCTATGGGCACTTCTGTGAAGTACTTTCCTGACTTGGTT
TTGTTTTTGTTTTGGTTTGGTTTGGTGGGTTTTGAGACAGGGTTTCTCTG
TATAGCCCTGGGTGTCCTGGAACTCACTCGGTAAACCAAGCTTGACTCGA
ACTCAGAAATCTGCCTGGCCCTGCCCTCCCGAGGGTGGGTTTAAAGGGGG
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_d08.g1 MSMg01no368_d08.g1 CHROMAT_FILE:
MSMg01no368_d08.g1 PHD_FILE: MSMg01no368_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:35 2005
         (548 letters)



>mm_chr7_65958343_65959289
          Length = 947

 Score =  851 bits (440), Expect = 0.0
 Identities = 461/468 (98%), Gaps = 1/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 80  gtctgcagtcccagtactcaagaggccaaagcatcaggatcagagagatccaggctaacc 139
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 947 gtctgcagtcccagtactcaagaggccaaaccatcaggatcagagagatccaggctaacc 888

                                                                       
Query: 140 taggtctactcagtgaagtcaaagttagtctggactacagaccctatttcaggatggaat 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 taggtctactcagtgaagtcaaagttagtctggactacagaccctatttcaggatggaat 828

                                                                       
Query: 200 tgaaagggatgatggcattcacttcattggtagagcccttgcttagaatgtgcacggtcc 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 tgaaagggatgatggcattcacttcattggtagagcccttgcttagaatgtgcacggtcc 768

                                                                       
Query: 260 tatgttcaatcacaagcactgtcggcgaaaggtgacaaattgagatatgaaaagaataag 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 tatgttcaatcacaagcactgtcggcgaaaggtgacaaattgagatatgaaaagaataag 708

                                                                       
Query: 320 acaagaaaactgggtagagctagaaatgcatgagtagacatgaggctctgcatccaaaaa 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 acaagaaaactgggtagagctagaaatgcatgagtagacatgaggctctgcatccaaaaa 648

                                                                       
Query: 380 acctctagtaagagccagtgggaccgcatagcatcacaagttagtgtctgtccgcttgac 439
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 atctctagtaagagccagtgggaccgcatagcatcacaagttagtgtctgtccgcttgac 588

                                                                       
Query: 440 acagcccaaagttaccttagagtgtgttagtgtggggattgactggataatactggccta 499
           ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 587 acagcccaaagttaccttagagtgtgttagtgtggagaatgactggataatactggacta 528

                                                           
Query: 500 tgggcacttctgtgaagtactttcctgacttggttttgtttttgtttt 547
           |||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 527 tgggcacttctgtgaagtactttcctgacttgtttttgtttt-gtttt 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 947
Length adjustment: 10
Effective length of query: 538
Effective length of database: 937
Effective search space:   504106
Effective search space used:   504106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)