BAC Information

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BAC

Clone NameMSMg01-369D18
Chromosome7 (Build37)
Map Location 51,606,170 - 51,606,625
singlet/doubletsinglet
Overlap geneShank1
Upstream geneSiglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a
Downstream gene1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369D18.T7 (MSMg01no369_d18.b1)MSMg01-369D18.TJ (MSMg01no369_d18.g1)
ACCAG476271AG476272
length740735
length of high quality
(start - end)		361 (45 - 405)456 (75 - 530)
definitionCHROMAT_FILE: MSMg01no369_d18.b1 PHD_FILE: MSMg01no369_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:54 2005CHROMAT_FILE: MSMg01no369_d18.g1 PHD_FILE: MSMg01no369_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTCTGACCAACAGACTGGGAGGAAGAAGCAGCTCATTATGAGAA
AAAAGGGTACCAGCCAGGTAAAGTGCTAGCTAATCAGTTAAGGAAGCCAA
AAGCGGCTGGCGAAGGCCAGTTTGCTGATTGGCCTCAGGGCAGTCGGCTT
CAAGGTCCGCCCTATGCGGAGTCCCCGCCCTGCGTAGTGCGTCAGCCCTG
CGCAGAGAGACAATGCGCAGAGAGGCAATGCGCAGATTCATTCATTCCCA
GAGAGGAACAAAGGAAAATACAACAGGCATTTCCAGTCTTTGAAGGAGCC
GAGGGTGGTCGTGTCCACGCTCCGGTAGAATACGTACAGATTAAAGAACT
TGTCGAGTCGGTCCGTAAATACGTGAACCAATGCTAATTTTACCTTGGTG
CAGTTAGACAGGCTCGCCGGCATGGCACTAATTCCTGCCGACTGGCAAAC
GTTCGCTTAATGCGCTCTTCCTAATATGGGTCAATTTATGCAATGGATAG
TTCTTTTGTTTTTATTTCGCCCATCCCCCTTTTTTAACCCTTTTTTTCCT
GTTTTGACCTAATTAATTATTATTTAGGCCTTTTTTGATCTTTTCACCTC
GTTCTGCAATTTATATTCTGTTTAAATTTACAACTTTTTTTTGGTGTTTC
CTATCCTTCTATATTTTCCCCCTCCCCTCTCTCCTATTCG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCCAGGACTTGCTTTCTAGCTTCTG
TGTGCCTCGTCTCTGCCATGAAAGAGCTCAGAGGAGAAAGTAATTTCCTT
TTGGAGTGTGGAGAACTCTGACTGATCCCTCTTCGCTCTCTTTTCTCTCT
TCCTCTAACTGCTGCCCCGAAGTCGAGCTTTGATCCTCACCACCGCTCCC
AGCCAAGTTATGACCGGCCTTCTTTCCTGCCTCCCGGACCTGGCCTTATG
CTCCGGCAGAAATCTATCGGTATGTCCCCCAGAAAGGACCGTAGCCCAGG
GGCAGGAGAGGACTGTCTAGGTTTGGAAATGTGCTGCAGCACCACATCCG
ACCCTGGTTAGAGGAGGTCGGGTTTGGATGAATTCCAACTTTGCTTCTCA
CCTGCGGGACTGCGTGGGTGGTCTCTCGGCTTCCTGACCTTCATCTAGAA
AACCGGGGTCTTTGGTGTCCAGAGGAAGGACTGTTGGTAGCATGCGGGTA
GTAAGTGGAGGCAGATCCTTGTTGAGAGAGAAGCTAGCTATTTCCTAGGG
GTCTCTGTGTAAAATATTAACCTTTTTCTTCTTCTCTAGCTCGCCTTTAA
TTTCGCCTCCAGGTCCCCATTATTCTGGGATTCCAGGCTTTTGAATTTAT
TTGAAAAGGGTTTCCTCTCCCCGGGCCTGAAGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_d18.g1 MSMg01no369_d18.g1 CHROMAT_FILE:
MSMg01no369_d18.g1 PHD_FILE: MSMg01no369_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:54 2005
         (456 letters)



>mm_chr7_51605970_51606825
          Length = 856

 Score =  874 bits (452), Expect = 0.0
 Identities = 455/456 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccaggacttgctttctagcttctgtgtgcctcgtctctgccatgaaagagctcagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccaggacttgctttctagcttctgtgtgcctcgtctctgccatgaaagagctcagagg 260

                                                                       
Query: 61  agaaagtaatttccttttggagtgtggagaactctgactgatccctcttcgctctctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaagtaatttccttttggagtgtggagaactctgactgatccctcttcgctctctttt 320

                                                                       
Query: 121 ctctcttcctctaactgctgccccgaagtcgagctttgatcctcaccaccgctcccagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctcttcctctaactgctgccccgaagtcgagctttgatcctcaccaccgctcccagcc 380

                                                                       
Query: 181 aagttatgaccggccttctttcctgcctcccggacctggccttatgctccggcagaaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagttatgaccggccttctttcctgcctcccggacctggccttatgctccggcagaaatc 440

                                                                       
Query: 241 tatcggtatgtcccccagaaaggaccgtagcccaggggcaggagaggactgtctaggttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcggtatgtcccccagaaaggaccgtagcccaggggcaggagaggactgtctaggttt 500

                                                                       
Query: 301 ggaaatgtgctgcagcaccacatccgaccctggttagaggaggtcgggtttggatgaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaaatgtgctgcagcaccacatccgaccctggttagaggaggtcgggtttggatgaatt 560

                                                                       
Query: 361 ccaactttgcttctcacctgcgggactgcgtgggtggtctctcggcttcctgaccttcat 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaactttgcttctcgcctgcgggactgcgtgggtggtctctcggcttcctgaccttcat 620

                                               
Query: 421 ctagaaaaccggggtctttggtgtccagaggaagga 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagaaaaccggggtctttggtgtccagaggaagga 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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