BAC Information

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BAC

Clone NameMSMg01-369G13
Chromosome7 (Build37)
Map Location 134,984,963 - 134,985,343
singlet/doubletsinglet
Overlap geneStx4a
Upstream geneDoc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2
Downstream geneZfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369G13.T7 (MSMg01no369_g13.b1)MSMg01-369G13.TJ (MSMg01no369_g13.g1)
ACCAG476404AG476405
length767748
length of high quality
(start - end)		206 (42 - 247)383 (71 - 453)
definitionCHROMAT_FILE: MSMg01no369_g13.b1 PHD_FILE: MSMg01no369_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:07 2005CHROMAT_FILE: MSMg01no369_g13.g1 PHD_FILE: MSMg01no369_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTCTTTCTCTTTTTCTTTTTCTTTTACTTTTTCTTTTTTTAAGTGTAG
AAATAGTTTATTCAGGGCATGGGGAGGGGAGTTAAGAGGGCAGTAGAGGC
AGAGAAAGGCAGAGAGAGGGAGAGAGTAGAGAAGTAGAGGCCATGACCAC
GTGGAGAGAGGGGGGAAAGGAATGGGGAGAGAGGCAAGAGTAGAGAGTAT
CAGACACCATAGAAGCAAGAGAAAGATGGGGGGGAAAGCAGCCCCTTTTA
TACTGAGCCAAGCCTTTTTGGTTTTTGCCAGGTAACTGTGGGAGTGGAGA
CCATATATTATTCCAACATTCTCCTGATTTGGTTTACTTATCAACGATCT
ATTATTATGATGATGGTGAATCATCATTATGGTCTTCTCGATCTTTGGCT
GTTTCATGCTGACATTGTGTTCTGACTTCTCTTGTATTTCTTCTTCCGCT
TTGTTTTCCTCCTTCCTTTTTTTCTTCCTTTCTTCCTCTCTTCTCTTTTC
TTTCTTTTTTCCCCTTTTTCTTCTTTTTCTTTTCCTCCTTCCTTTGTTCG
TTTTCTTTCTTGTTTCCCCTTTTTGTTTTCTCCTTTCCTTTTTCCGCCTT
TTCCCTTTTTTATCCCCTCTCCTTCTCTGCTTCCCTTTTTTCCCCCCCTT
TTTTTTCTTTCTCTCCCTTTTCTCTCCCCTTTTTTCGCTTTTTTTTCATT
TTTCTTCCGCTTCTCCT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTTCTCTTCCCCCCATCCTGCTCCCGCAG
CTGCCGCCCCGCCCCTCGGGGGATGACTCCGAGCATGCGCGCGAGGGCTC
GGCTCGTCCTCGCTAGAGGGAAAGGCGGAGGTCGGAAGCAGTGGCAGCCG
AACGGAAGCGAGGCTGCCTGAGTCCAGAGCCCGCCCCGCTGCTCCCCCCC
CCCCCCCACTACCGGAACATCTCATATTGGAGCAGAGATCTAGTTGCCCA
AAGGGTTGGGAATGTGTCATTTGCACGCAGTCTGAGAGCCTCGTATCTCA
CATCACCCCATGGCGCCCCCTCATCACGTGACAGGCCGGACCCAGCTCCG
CGGGCTGCACGCCCGACCGCCAGTCATGTGTTCCGGCCTGTCAGCGACGT
CTCGGGCTTCAGTCTCGCGACGTCCCCGACACCCCAGCGTCTGAGCTGTG
CCCCAACAGCTTCTTCGAGGTGTGGAAGGGTACCCTGCTTACTCTCATCC
CCCTATTAAGGGTTGCCGGAAGAAATCTCTTTTTTTGCTGTTTTAACTTC
TGCTCCCTTGGGCCGCGTTGTATGTGAACTATAGTAATTTTGGGCGTTTT
TCTTCTCCTGTTTTCTTTGTTCTTCTTTTAGATTATTTTCCCCCTCTTTT
TCCCTTTTTTTCTCCCTTTTTCCTTTTTTCTCTTTTTTGTTGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_g13.g1 MSMg01no369_g13.g1 CHROMAT_FILE:
MSMg01no369_g13.g1 PHD_FILE: MSMg01no369_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:07 2005
         (383 letters)



>mm_chr7_134984763_134985543
          Length = 781

 Score =  706 bits (365), Expect = 0.0
 Identities = 378/383 (98%), Gaps = 2/383 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttctcttccccccatcctgctcccgcagctgccgccccgcccctcgggggatgactcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ccttctcttccccccatcctgctcccgcagctgccgccccgcccctcgggggatgactcc 522

                                                                       
Query: 61  gagcatgcgcgcgagggctcggctcgtcctcgctagagggaaaggcggaggtcggaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gagcatgcgcgcgagggctcggctcgtcctcgctagagggaaaggcggaggtcggaagca 462

                                                                       
Query: 121 gtggcagccgaacggaagcgaggctgcctgagtccagagcccgccccgctgctccccccc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 461 gtggcagccgaacggaagcgaggctgcctgagtccagagcccgccccgctgct--ccccc 404

                                                                       
Query: 181 cccccccactaccggaacatctcatattggagcagagatctagttgcccaaagggttggg 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 403 cccccccactaccggaacatctcatattggagccgagatctagttgcccaaagggttggg 344

                                                                       
Query: 241 aatgtgtcatttgcacgcagtctgagagcctcgtatctcacatcaccccatggcgccccc 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aatgcgtcatttgcacgcagtctgagagcctcgtatctcacatcaccccatggcgccccc 284

                                                                       
Query: 301 tcatcacgtgacaggccggacccagctccgcgggctgcacgcccgaccgccagtcatgtg 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tcatcacgtgacaggccgggcccagctccgcgggctgcacgcccgaccgccagtcatgtg 224

                                  
Query: 361 ttccggcctgtcagcgacgtctc 383
           |||||||||||||||||||||||
Sbjct: 223 ttccggcctgtcagcgacgtctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 781
Length adjustment: 9
Effective length of query: 374
Effective length of database: 772
Effective search space:   288728
Effective search space used:   288728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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