BAC Information

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BAC

Clone NameMSMg01-370F04
Chromosome7 (Build37)
Map Location 53,287,340 - 53,287,606
singlet/doubletsinglet
Overlap genenone
Upstream genePrr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6
Downstream geneNomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370F04.T7 (MSMg01no370_f04.b1)MSMg01-370F04.TJ (MSMg01no370_f04.g1)
ACCAG477098AG477099
length766802
length of high quality
(start - end)		343 (46 - 388)253 (75 - 327)
definitionCHROMAT_FILE: MSMg01no370_f04.b1 PHD_FILE: MSMg01no370_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:20 2005CHROMAT_FILE: MSMg01no370_f04.g1 PHD_FILE: MSMg01no370_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCATCTGCTTCAGAACTACTAAGAGCTGGCTTCCTGAGCTCATC
TAGTGACGAGTATCTCCTAGAGACCTCCGCTAATCGATCTTTTTTCTTTT
CTTTTTTCTTTTCCTTCCTTCTAATCTCTCCCCAGGTATTCTTACCTGAC
CTAAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTATACTTATT
TTGTGTACCATATTTTCTCTTTGCTCCTACTCTCTCTCCCCGCTTTACTT
CTGATAGATTGCCCTGAATTTCATCCAGAATTTTCAGCCCTATCTTAATC
ACCTGATAACATGTGAAAAGGAACAAAAGGGCTCCTAACACTACACAAAA
TTTAAAGCCAAACATTTTCCACTTTACTTCTGATAGACTGTCCTGAACTT
CCTTACAAAGTTCATCGCCAGGTGTACCTCGTAAAGTTGCACTCACTGGT
ACTCTCGTTCCCCAGTTGAATAGTTCTCGAATCCATGTAGCCTTATCCCT
CTTATTTTTCCGCTTTTACTGTCATCCTTTATCACTGCGCACTCGTTTTT
CCTGCTTTCTTAAAATGTTTTCACTATATCTCTGAGTTTTTTTCATTATT
CTCTTTCTCCCATCCTTCCCCTCCCCGTTTTTTACTCCTTTTACTTCATT
CTCCCCTTCTTTCTTTCCTCCGTCTCTATATCCTCAGTCTTATACTCTCC
CTTCATTCCCCTTCTN

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTGAGAGAATGAATTCAAAGGAAA
TTAAACTGGATGAATTTCAGGTTTAAGAGAGGAAAAAAAAACCTCAAAGT
GTTTCTATACAACTTAGAGTTGGGATCAAAATAAAACGTAAAAGATACAT
TTATTTATTATATGTAAGTACACTGTAACTGTTTTCAGACATCCAGAACA
GGGCATCAGATCTCATTACAGATGACTGTGAGCCACCATGTCGCTGCTGG
GATTTGAACTCAGGACCTTCGGAAGAGCAGCCAGTGCTCTTAACCGCTGA
GCCGCCTCTCCAGCCCCATAAATATCTTTTTAAATATAACTATGAACTTA
GTTAATATGTTTCCGCACAACATTACCCCCTTTTACCCTTGTCATCTCGT
TTTACGCTTCTTACCTCTCTTCCCTCTATTAGCTCTACGTTTTACATCAC
GCCGCTTCTATTTTTCATGGCTCATATTTCCTTTTCTTCCATCTTTAAAT
TATCCTTCTATTTTATCTTTAACACATTTTTTTTCCAGTTTTTCCCGCCC
CTTTCTCACTTTCCCCCCTCCCCCTCCTATTTCTCCCGCTCCCCCTTTTT
TTTTCGCCGTCCCTCCTATTTCACCTCCCTTTTTTTTTTCTCCGTTTTTT
GCCCATTCTCTTTTTCGTTTTCCTTTTTTCTCCCCTATTCTTCCCTCTTT
TCTCGTCTCTTTTTACCACCCCTCTTTCTACTTAATTTTATGTTTCCTTC
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_f04.g1 MSMg01no370_f04.g1 CHROMAT_FILE:
MSMg01no370_f04.g1 PHD_FILE: MSMg01no370_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:20 2005
         (253 letters)



>mm_chr7_53287140_53287790
          Length = 651

 Score =  404 bits (209), Expect = e-117
 Identities = 246/269 (91%), Gaps = 18/269 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgagagaatgaattcaaaggaaattaaactggatgaatttcaggtttaagagaggaa 60
           ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||  |
Sbjct: 201 atttgagagaatgaattcaaaggcaattaaactggatgaatttcaggcttaagagag--a 258

                                                                       
Query: 61  aaaaaaacctcaaagtgtttctatacaacttagagttgggatcaaaataaaacgt----- 115
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
Sbjct: 259 aaaaaaacctcaaagtgtttctatacaagttagagttgggatcaaaataaaacgtaaata 318

                                                                       
Query: 116 -----------aaaagatacatttatttattatatgtaagtacactgtaactgttttcag 164
                      ||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 319 tcttttttaaaaaaagattcatttatttattatatgtaagtacactgtagctgttttcag 378

                                                                       
Query: 165 acatccagaacagggcatcagatctcattacagatgactgtgagccaccatgtcgctgct 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acatccagaacagggcatcagatctcattacagatgactgtgagccaccatgtcgctgct 438

                                        
Query: 225 gggatttgaactcaggaccttcggaagag 253
           |||||||||||||||||||||||||||||
Sbjct: 439 gggatttgaactcaggaccttcggaagag 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 651
Length adjustment: 9
Effective length of query: 244
Effective length of database: 642
Effective search space:   156648
Effective search space used:   156648
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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