BAC Information

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BAC

Clone NameMSMg01-371C09
Chromosome7 (Build37)
Map Location 52,622,715 - 52,623,217
singlet/doubletsinglet
Overlap geneMtag2
Upstream gene1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik
Downstream geneLin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371C09.T7 (MSMg01no371_c09.b1)MSMg01-371C09.TJ (MSMg01no371_c09.g1)
ACCAG477727AG477728
length769756
length of high quality
(start - end)		504 (76 - 579)612 (42 - 653)
definitionCHROMAT_FILE: MSMg01no371_c09.b1 PHD_FILE: MSMg01no371_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:27 2005CHROMAT_FILE: MSMg01no371_c09.g1 PHD_FILE: MSMg01no371_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACATTCAAGGTGGGATTTTTTTTT
TTTTTTAAACAAGGGCGGCTCCCGGAAGGATGTGCTCGGTTGGAAGGTGA
GGCAAGTGGACGACGGGTGGCGAGTGCGTGTTACTCTGCACCCCTGCGCC
CGTCTAGGGTACTGCATGCGCCCCACCAACCCGACTCCTACGCAGACGGT
GGCACGGCCCGCAGGGTTCCCCCAGTGGATGGTTCGCTCCGCCCCGCCTA
CAGAGGCAATGATCAGGCGGCTTCTGCTGGTTTCAAGACTCCCGCGTCCG
ACTCACTGGAGACCTTGCCAGGCCTTGGCCTCCCGAACCTCTTAAGGGTT
GGGGGCAGTGGTCTTTAGTGCTGCTCCCTGGCGCTCACATAGACGCAGCC
TTGGGTCGGGCTAGTCTCTGGGACACCGGCCAGCCTCCGCCTTCAGAGCT
GCGCGAGCGTTGTCTATCATGGTACACAGACTGGAATGAGCTTGTTCTTA
ACCTCAGCTTCACTGTCCTCCTCCCCCACAGAGACTATTCCAGGATGCGC
GACAGACACACAAGACACTTCGTGAGGGGTAAAGATCTTTAAATTAAGGA
GCCAGGGGCAATAAATAATACTTGTACGGGGAGGAGGAGGTCCTTGGCCT
GGGATTTCCGCCTCCAAACTCCAGGACCCTTGAAGGGGTAAAAAGAGGAA
TTTTTAAATCTACGTTTGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCATTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTAGAGTTTCATTAGG
TCCCATTTGTCAATTCTCGACCTTACAGCACAAGCCATTGCTGTTCTGTT
CAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCTCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCAC
TTAGATTTGACCTAGTACAAGGAGATAAGTATGGATTGATTTGCATTCTT
CTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTC
TTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCAT
AGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACT
TGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTA
GTAAAGCTTTAGGTCTGGCATGGTGATTCCGNCAGAAGTTCTTTTATCCT
TGAGAAGACTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGACAATTTGC
AAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_c09.b1 MSMg01no371_c09.b1 CHROMAT_FILE:
MSMg01no371_c09.b1 PHD_FILE: MSMg01no371_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:27 2005
         (504 letters)



>mm_chr7_52622515_52623417
          Length = 903

 Score =  932 bits (482), Expect = 0.0
 Identities = 499/506 (98%), Gaps = 5/506 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacattcaaggtgggatttttttttttttttaa-acaagggcggctcccggaaggatgtg 59
           ||||||||||||||||||||||||||||   || ||||||||||||||||||||||||||
Sbjct: 201 aacattcaaggtgggatttttttttttt---aagacaagggcggctcccggaaggatgtg 257

                                                                       
Query: 60  ctcggttggaaggtgaggcaagtggacgacgggtggcgagtgcgtgttactctgcacccc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctcggttggaaggtgaggcaagtggacgacgggtggcgagtgcgtgttactctgcacccc 317

                                                                       
Query: 120 tgcgcccgtctagggtactgcatgcgccccaccaacccgactcctacgcagacggtggca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgcgcccgtctagggtactgcatgcgccccaccaacccgactcctacgcagacggtggca 377

                                                                       
Query: 180 cggcccgca-gggttcccccagtggatggttcgctccgccccgcctacagaggcaatgat 238
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cggcccgcaagggttcccccagtggatggttcgctccgccccgcctacagaggcaatgat 437

                                                                       
Query: 239 caggcggcttctgctggtttcaagactcccgcgtccgactcactggagaccttgccaggc 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 caggcggcttctgctggtttcaagactcccgcgtccgactcactggagaccttgccaggc 497

                                                                       
Query: 299 cttggcctcccgaacctcttaagggttgggggcagtggtctttagtgctgctccctggcg 358
           |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 498 cttggccttccgaacctcttaagggttgggggcagtggtctttagtggtgctccctggcg 557

                                                                       
Query: 359 ctcacatagacgcagccttgggtcgggctagtctctgggacaccggccagcctccgcctt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctcacatagacgcagccttgggtcgggctagtctctgggacaccggccagcctccgcctt 617

                                                                       
Query: 419 cagagctgcgcgagcgttgtctatcatggtacacagactggaatgagcttgttcttaacc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cagagctgcgcgagcgttgtctatcatggtacacagactggaatgagcttgttcttaacc 677

                                     
Query: 479 tcagcttcactgtcctcctcccccac 504
           ||||||||||||||||||||||||||
Sbjct: 678 tcagcttcactgtcctcctcccccac 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 903
Length adjustment: 10
Effective length of query: 494
Effective length of database: 893
Effective search space:   441142
Effective search space used:   441142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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