BAC Information

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BAC

Clone NameMSMg01-372I06
Chromosome7 (Build37)
Map Location 86,896,933 - 86,897,492
singlet/doubletsinglet
Overlap geneEG626359
Upstream geneMrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a
Downstream geneEG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372I06.T7 (MSMg01no372_i06.b1)MSMg01-372I06.TJ (MSMg01no372_i06.g1)
ACCAG478761AG478762
length739749
length of high quality
(start - end)
561 (60 - 620)526 (70 - 595)
definitionCHROMAT_FILE: MSMg01no372_i06.b1 PHD_FILE: MSMg01no372_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:17 2005CHROMAT_FILE: MSMg01no372_i06.g1 PHD_FILE: MSMg01no372_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CAGATTCCCCCGCATGAGGAGCCTAGTGGGGTGAAGACACACAGAAAGGT
AAGGGAGGAGCTTTCTCTCAAAGGAGCTTGTGAACCCAACATATCCACAT
CAAACAGCTGTGCATGTGAAAAAGTGTGGGATGATGGGCAGAGCTGGGGG
CTGGGAGCGCAGGACAGACCACTTAGATGCTGTGCTTATAGGAGACTTCC
AGGAGAGCAACACTAGCTAAGTATGAGGGGACTGGGAAGAGGAACAGACT
AAATATTTCATATTATTTGTAGAGGAAGGCTGGGAGACCAAGGGCAGCAT
AGGCCACATGGGGCTGCAGAGCACAGGCAGGATGGGAAGATTAGAGTCAG
ATGCTGTGCCCCAGCCCTTCCTGGCTCTCCAGTCTCACAGTCTCTTATTT
TCCTGTTCCAGGTATTGTGAGATTGTTTTACCTGTGTAAGGACAGTCTTT
ATCACATCAAGGCCATCAATGAAGTGGCGAGTTCCTTTCTTTTCCCGTTA
GCCGGAGAACATCAAGAAGGTACAAAGCACCAGGCAGTGGTGGTGCACGC
CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAG
GCTTATTTCTGAGTTAGAGGTCAGCCTGGTGTACAGAGTGAGTTTCATAA
CAGCCAGGGCTACCCAGATAAACCCTGCCTCAAAAAACN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTTTGTAAACCAGGCTGGCCTCGAAAACAG
AAATCTGTCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCGTGCACCA
CCGTGGCCCAGCTACATCTGGCTTTTAATAAACATTTCTTTCTAAAGATT
TATTTACTTATGTATATAAGTACACTGTGGCTGTCTTCAAACACACCAGA
AGAGGGCATCAGACCTCATTATAGATGGTCGTGAGCCACCATGTGGTTGC
TGGGAATTGAACTCTTGACCTCTGGAAGAGCAGCCAGTGCTTTTAACTGC
TGAGCCATCTCTCCGCCTGTGTATGGGTGTTTTGTCTGTGTGTGTGTTTG
TGCAACAAGTATGTACCTGATATCCCCAGAGACAAGAATGTCACTGAATC
CTCTGGGATTGGAGGCACAGAGATTGTAAGTTGCTGTGTGGATGCTGGAA
ATAGAACCCAGATCCTTTAAAAGAGCAGCCACTGCTCTTAACTGCTGAGC
CATCCTTCCAGCACTGGTTTGGTTTAGTTGTTGTTTGTTGCTTTATCACA
CAGAATCTCACTGGGCCTGTTCTTTCTGGCCGCTGGTTCTCTCTCCGTGC
GACTTTCTAAAAATGGCCCTCGTGGAACACACATAATGGCCTTCCCTCTC
ACCCTGTTAACCATTTTTATCGCTGGTGCACGATTTGACTTTCCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_i06.b1 MSMg01no372_i06.b1 CHROMAT_FILE:
MSMg01no372_i06.b1 PHD_FILE: MSMg01no372_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:17 2005
         (561 letters)



>mm_chr7_86896733_86897692
          Length = 960

 Score = 1023 bits (529), Expect = 0.0
 Identities = 553/563 (98%), Gaps = 5/563 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccgcatgaggagcctagtggggtgaagacacacagaaaggtaagggaggagctttctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccgcatgaggagcctagtggggtgaagacacacagaaaggtaagggaggagctttctctc 260

                                                                       
Query: 61  aaaggagcttgtgaacccaacatatccacatcaaacagctgtgcatgtgaaaaagtgtgg 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 aaaggagcttgtgaacccaacatatccacatcaaacagctgtgcgtgtgaaaaagtgtgg 320

                                                                       
Query: 121 gatgatgggcagagctgggggctgggagcgcaggacagaccacttagatgctgtgcttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgatgggcagagctgggggctgggagcgcaggacagaccacttagatgctgtgcttat 380

                                                                       
Query: 181 aggagacttccaggagagcaacactagctaagtatgaggggactgggaagaggaacagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 aggagacttccaggagagcaacactagctaagtatgaggggactgggaagaggaacagat 440

                                                                       
Query: 241 taaatatttcatattattt--gtagaggaaggctgggagaccaagggcagcataggccac 298
           ||||||||||| | ||     |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaatatttcaaagta---aggtagaggaaggctgggagaccaagggcagcataggccac 497

                                                                       
Query: 299 atggggctgcagagcacaggcaggatgggaagattagagtcagatgctgtgccccagccc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atggggctgcagagcacaggcaggatgggaagattagagtcagatgctgtgccccagccc 557

                                                                       
Query: 359 ttcctggctctccagtctcacagtctcttattttcctgttccaggtattgtgagattgtt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttcctggctctccagtctcacagtctcttattttcctgttccaggtattgtgagattgtt 617

                                                                       
Query: 419 ttacctgtgtaaggacagtctttatcacatcaaggccatcaatgaagtggcgagttcctt 478
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 618 ttacctgtgtaaggacagtctttatcacatcaaggccatcaatgaagtggtgagttcctt 677

                                                                       
Query: 479 tcttttcccgttagccggagaacatcaagaaggtacaaagcaccaggcagtggtggtgca 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcttttcccgttagccggagaacatcaagaaggtacaaagcaccaggcagtggtggtgca 737

                                  
Query: 539 cgcctttaatcccagcacttggg 561
           |||||||||||||||||||||||
Sbjct: 738 cgcctttaatcccagcacttggg 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 960
Length adjustment: 10
Effective length of query: 551
Effective length of database: 950
Effective search space:   523450
Effective search space used:   523450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)