Query= MSMg01no372_k16.b1 MSMg01no372_k16.b1 CHROMAT_FILE:
MSMg01no372_k16.b1 PHD_FILE: MSMg01no372_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:28 2005
(524 letters)
>mm_chr7_123295353_123296279
Length = 927
Score = 884 bits (457), Expect = 0.0
Identities = 506/529 (95%), Gaps = 14/529 (2%)
Strand = Plus / Plus
Query: 1 atttattaataaccataaaacaaaaagtaaaaagagatttggtgacatagttgaatatgc 60
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 208 atttattaataatcataaa-------gtaaaaagagatttggtgacatagttgaatatgc 260
Query: 61 ctcagaggtagggtgcttgc----atgaggctggaggttcaatcccatagagaggatggt 116
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 261 ctcagaggtagggtgcttgcttgcatgaggctggaggttcaatcccatagag--gatggt 318
Query: 117 cctagaggggcacagcttgtctctcatgtccagggtggtcctctgggctcattcaagtgc 176
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 319 cctagaggggcacagcttgtctctcatgcccagggtggtcctctgggctcattcaagtgc 378
Query: 177 atccactttcctgggtgtgtgaacctcttctcgtgctgtctctacctacagtacctgcat 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atccactttcctgggtgtgtgaacctcttctcgtgctgtctctacctacagtacctgcat 438
Query: 237 ccacaaccccc-tcatttcaaggacatcctgccgagcatgttataggatccataggttcc 295
||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccatatcccccctcatttcaaggacatcctgccgagcatgttataggatccataggttcc 498
Query: 296 aatctgtgtggccctgtgagaggacattcaccaccacagagaaagccctttcagaagacc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aatctgtgtggccctgtgagaggacattcaccaccacagagaaagccctttcagaagacc 558
Query: 356 atttctaccaactgaaccgtctgtctgcctatagctgccatctgcttgacttaatcctct 415
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 559 atttctaccaactgaaccgtccgtctgcctatagctgccatctgcttggcttaatcctct 618
Query: 416 tcagagccacagaaaacacatggtggaagaggggaacctgagttcaaaggtgacatcagc 475
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 619 tcagagccacagaaaacacatgggggaagaggggaacctgagttcaaaggtgacatcagc 678
Query: 476 acatcacgggaggcagagttgagatgtgcctaacctcctgggctgcgac 524
||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 679 acatcacgggaggcagagtagagatgtgcctaacctcctggactgcgac 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 927
Length adjustment: 10
Effective length of query: 514
Effective length of database: 917
Effective search space: 471338
Effective search space used: 471338
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_k16.g1 MSMg01no372_k16.g1 CHROMAT_FILE:
MSMg01no372_k16.g1 PHD_FILE: MSMg01no372_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:28 2005
(241 letters)
>mm_chr7_123501858_123502498
Length = 641
Score = 443 bits (229), Expect = e-129
Identities = 238/241 (98%)
Strand = Plus / Minus
Query: 1 ataattcacttttatgctagtgttaacgtttctaatgtttagtgttgtgtttgcagtcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataattcacttttatgctagtgttaacgtttctaatgtttagtgttgtgtttgcagtcat 382
Query: 61 gttcgttcttcagttctaatgctatgcctctgaaagtcacaatggtgaatgctgatcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 gttcgttcttcagttctaatgctatgcctctgaaagtcacaatggtgaatgctgaccctc 322
Query: 121 tgggggaagaaattaatgtcatgtttaaggtgagaagactagagttattctttgtttttt 180
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 321 tgggggaagaaattaatgtcatgtttaaggtgagagggctagagttattctttgtttttt 262
Query: 181 gtctcttggggtttgtgggggcgaggtgcatttggtttggttttgagacggggtctctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctcttggggtttgtgggggcgaggtgcatttggtttggttttgagacggggtctctat 202
Query: 241 a 241
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
