BAC Information

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BAC

Clone NameMSMg01-373A24
Chromosome7 (Build37)
Map Location 132,448,654 - 132,630,669
singlet/doubletdoublet
Overlap gene4933440M02Rik, LOC100043014, Jmjd5, Nsmce1
Upstream geneEG628779, EG545999, LOC670828
Downstream geneEG244214, Il4ra, Il21r, Gtf3c1, D430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373A24.T7 (MSMg01no373_a24.b1)MSMg01-373A24.TJ (MSMg01no373_a24.g1)
ACCAG479180AG479181
length724738
length of high quality
(start - end)		519 (19 - 537)518 (56 - 573)
definitionCHROMAT_FILE: MSMg01no373_a24.b1 PHD_FILE: MSMg01no373_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:57 2005CHROMAT_FILE: MSMg01no373_a24.g1 PHD_FILE: MSMg01no373_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,448,654 - 132,449,167)(132,630,152 - 132,630,669)
sequence
ACTCCTATATTCAGAGGATCCGCGGAATTCATTGAACTTTCCAGATGACT
GCATGAGCTAGGTGCTATTGATTTCTCATTTTACAGAGAAGCAAACCAGG
GTACAAAAGAGACCCAAACATTACTGATCTTTGCCCTTCAGCACTTCACC
TATGGATGAGAAGACGGCAGAATCAATAACCTATGCCAAATTGAGATAAA
GAGGTTATTAATGCTCCTGGCTTGTCAGCCGTACTGGGGTTCTGTGTAAC
ACAGCTGGAAATGGTGGAGCTGGGATCTGAACCCTGACTAGTGACCCAGC
CCTATTCCTTGAAACTGGACCCCTCTACCTGAGACATCACAAGGCTATAC
CAAGTTCACTGGTCAGGCGGCCAGCTCCATTGAGCTCTTCACAGTCATTG
TGTCACATCATCAGTTCCCATCATCCTGGATTCTCTCCTCTGCCCCTTGT
AGTGATCAATGGATCATACAGGACCAGAGGAATAGAATGAGAGAGAAAAC
TACAGAANATTTCAGGCTGTGCCTACCACAGCCCCCACCTGCTGTGGGAA
ACGGTCCCTGAGTCTCACAAGTCTACAGTACCATCTGCCCCTTTTTTGCT
GGCCACAAGCCCCCTGGTCCTTCCGAACCCCTGAAGGTGTGGGCCCCCCC
ATGACGTATGGACCCCCCAAATAAACTGAGCCCCTAACCCTGGCCGCGCC
AATTGTTTTAAGGAGGGGGTTTAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGA
AATTCAAGATTGAACTTTGTGGCACTTGTCTTTACCTGCTAGGCCATGCT
GGACCCAAAAGATAGCTTTCTGTGAGAGAGCAGGGGACTGTAGAAATGGC
CCATAGTCCTGATACATGTATTATTGGCAGCTGGGGAGAGGGGAAGCTAG
AGTCTGTTAAGGTCATCTTGCCAGAGGGTACCTTACTTTTGTAGAAAGAA
CACAAGGCCTTGGCTTAGTTTCTCCAGGGCTGTTGAGCTGGTAAGTGGTC
CATACTTTTGGCACAGGGTACAGACTGAGAATTACCCTGTAGTGATTGGC
ACAGGTTTGCTGCTTTCCTCGGCACTACAATGTCACCTGTGTTAACTCAC
TGACTTAAAGGAGTTCTTGGGAGAACATTTCTGTCACCATTCCCACTTTT
TAGGTTAGAAACTGAATAAGATGGAGACTTGAGTGGTCCGGGTCACCACT
TTGCAAGTAGTTAGTTAGGAGGGCTGAGAACCTGTGCTTATGGCTCCAGA
ACCTCCAGAACCAGTGGGATGGACTCGAGCCGACCCGGTTCCTTTTACTT
CTGGAGTCTTCAGTACCAGTTGAACTTTGTCAGCCACACACCTGTGCTTG
TTTCCTGAACATGATGGAGAACATAACCCCCCCCTTTGGTCCTTGTTGGG
CCGGCATGTGGATCCTGCTCCTCTGGTTTTTCACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_a24.b1 MSMg01no373_a24.b1 CHROMAT_FILE:
MSMg01no373_a24.b1 PHD_FILE: MSMg01no373_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:57 2005
         (519 letters)



>mm_chr7_132448449_132449367
          Length = 919

 Score =  957 bits (495), Expect = 0.0
 Identities = 509/514 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcattgaactttccagatgactgcatgagctaggtgctattgatttctcatttta 65
           ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcattgaacagtcaagatgactgcatgagctaggtgctattgatttctcatttta 265

                                                                       
Query: 66  cagagaagcaaaccagggtacaaaagagacccaaacattactgatctttgcccttcagca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cagagaagcaaaccagggtacaaaagagacccaaacattactgatctttgcccttcagca 325

                                                                       
Query: 126 cttcacctatggatgagaagacggcagaatcaataacctatgccaaattgagataaagag 185
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 326 cttcacctatggatgagaagacggcagaatctataacctatgccaaattgagataaagag 385

                                                                       
Query: 186 gttattaatgctcctggcttgtcagccgtactggggttctgtgtaacacagctggaaatg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gttattaatgctcctggcttgtcagccgtactggggttctgtgtaacacagctggaaatg 445

                                                                       
Query: 246 gtggagctgggatctgaaccctgactagtgacccagccctattccttgaaactggacccc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gtggagctgggatctgaaccctgactagtgacccagccctattccttgaaactggacccc 505

                                                                       
Query: 306 tctacctgagacatcacaaggctataccaagttcactggtcaggcggccagctccattga 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tctacctgagacatcacaaggctataccaagttcactggtcaggcggccagctccattga 565

                                                                       
Query: 366 gctcttcacagtcattgtgtcacatcatcagttcccatcatcctggattctctcctctgc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gctcttcacagtcattgtgtcacatcatcagttcccatcatcctggattctctcctctgc 625

                                                                       
Query: 426 cccttgtagtgatcaatggatcatacaggaccagaggaatagaatgagagagaaaactac 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cccttgtagtgatcaatggatcatacaggaccagaggaatagaatgagagagaaaactac 685

                                             
Query: 486 agaanatttcaggctgtgcctaccacagccccca 519
           |||| |||||||||||||||||||||||||||||
Sbjct: 686 agaaaatttcaggctgtgcctaccacagccccca 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no373_a24.g1 MSMg01no373_a24.g1 CHROMAT_FILE:
MSMg01no373_a24.g1 PHD_FILE: MSMg01no373_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:57 2005
         (518 letters)



>mm_chr7_132629952_132630869
          Length = 918

 Score =  924 bits (478), Expect = 0.0
 Identities = 508/518 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagattgaactttgtggcacttgtctttacctgctaggccatgctggacccaaaagatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aagattgaactttgtggcacttgtctttacctgctaggccatgctggacccaaaagatag 659

                                                                       
Query: 61  ctttctgtgagagagcaggggactgtagaaatggcccatagtcctgatacatgtattatt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 658 ctttctgtgagagagcaggggactgtagaaatggcccatagtcctgatacatgttttatt 599

                                                                       
Query: 121 ggcagctggggagaggggaagctagagtctgttaaggtcatcttgccagagggtacctta 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 598 ggcagctggggagaggggaagctagagtctgttaaggtcgtcttgccagagggtacctta 539

                                                                       
Query: 181 cttttgtagaaagaacacaaggccttggcttagtttctccagggctgttgagctggtaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cttttgtagaaagaacacaaggccttggcttagtttctccagggctgttgagctggtaag 479

                                                                       
Query: 241 tggtccatacttttggcacagggtacagactgagaattaccctgtagtgattggcacagg 300
           ||||||| |||   ||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 478 tggtccagactcagggcacagggtacagactgagaattaccctgtggtgattggcacagc 419

                                                                       
Query: 301 tttgctgctttcctcggcactacaatgtcacctgtgttaactcactgacttaaaggagtt 360
           |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 418 tttgctgctttcctcggcactataatgtcacctgtgttaactcactgacttacaggagtt 359

                                                                       
Query: 361 cttgggagaacatttctgtcaccattcccactttttaggttagaaactgaataagatgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cttgggagaacatttctgtcaccattcccactttttaggttagaaactgaataagatgga 299

                                                                       
Query: 421 gacttgagtggtccgggtcaccactttgcaagtagttagttaggagggctgagaacctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gacttgagtggtccgggtcaccactttgcaagtagttagttaggagggctgagaacctgt 239

                                                 
Query: 481 gcttatggctccagaacctccagaaccagtgggatgga 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gcttatggctccagaacctccagaaccagtgggatgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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