BAC Information

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BAC

Clone NameMSMg01-374H15
Chromosome7 (Build37)
Map Location 111,082,774 - 111,083,334
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631
Downstream geneOlfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374H15.T7 (MSMg01no374_h15.b1)MSMg01-374H15.TJ (MSMg01no374_h15.g1)
ACCAG480263AG480264
length783766
length of high quality
(start - end)		572 (47 - 618)503 (57 - 559)
definitionCHROMAT_FILE: MSMg01no374_h15.b1 PHD_FILE: MSMg01no374_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:43 2005CHROMAT_FILE: MSMg01no374_h15.g1 PHD_FILE: MSMg01no374_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAGGGGTCCCCAAGGCCCAAAGGTGAAACACCAGGGCCTTATA
GAACCCAGTGAAGTATACAATGCATTAGCCTGAATCAGTCAGAAGAGACT
GGTGCAAGAGAGGGAAAAGCTGAAGGGCCTGGACAGAAGCTGTACAAAAT
CGTGAGTTGCTGGAGACCATTTGGATTATGATAGTGGGAGCCTGCCCAGG
GCCCTCTGTGATAACTCACATCCAGCAGAACTATTTGGAGAGTTGTAAGA
TAGGGAAACTCACAGAGCAATGGCCAATCTGTGACTGGGTCATTGTGTGC
TTGCTCCATGCTCTATTAGGAAGAGAAAGCTGGGCTTGTTACAGGGCTGT
ACTTTATATTGGAAGTGTTATGGTTTTCTTCAGACAAGAAATTGTAATTT
CCATAACTGTGCCCCTGAATATCATTAGCTTCCAATATTTTAGACCAAGT
CTTTACAAAGTTCAATAACCGACATCATTTTCCTGTAAAGGCAGATAAAA
CATGGATGAAAATTATCCATCATCCAAAGAAACCATGTAGATAGCTTGTC
CAGAATCATGCTTAAGAGTGTCAGGCATTCAAATATGGTATGTACACTCA
CCACTGTCAGACTGAATTTGCCTACTGTAGACATGAAGAAGCCTACCCAG
CTTGTAGGAGAAAAAATATTGAATTTATTTTAAGGAAAAAAAAAGTATTG
GAAATTGCCTCCCCTAAGGGACCTTTATTGGAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTAGGATTAAAGGC
GTGTGCCACTACCACCCAGCTGAAATTTTTCTTGAACTCATGTTTTCAGA
GTTCTTTCCTACAGCCTTAAGGACTCTCCTGAAGGTCACACTGTTCACCA
TTTTGCTAAGGAACATTAGACACACCCTTGCCTCCCAGACTCATGCTGCT
TCTAATTATCATGGAGTTATTAACTTTGGCAGGAAGAACATGCCCCAATA
TTTTTGGTAGGGAGAATATCCCCAAAAGAGGATCATGAAGTAAAAGATGC
ACATTATTATGCAAACAAGCTCCACAACCACACCAACTGTCAGCACTTGT
GGAGAGACCCATATCCTGCTGGTTCTGATCTAGGGGCTGGAAACCATGTC
ATGCCATCCCTTCAGTGGCCATGTAGGATTTCATAATCTATCCATCCGTC
TGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCAATTTATGNATCCATTTACCCATTCCTTCATT
GGAGGCTTCATATATAAATAAAAAAAAATTGCAACACCACATTGGACCTT
ATCTCATTGGGTTTTTAAAAAACCCAACAAAGAAATCGCCTCCTGGGAAT
AAAAATAAACATTCTTGAAAGGAAGATATTTACTCACCGAAAAAGAAATT
CCTTGGGGGTAACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_h15.b1 MSMg01no374_h15.b1 CHROMAT_FILE:
MSMg01no374_h15.b1 PHD_FILE: MSMg01no374_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:43 2005
         (572 letters)



>mm_chr7_111082570_111083541
          Length = 972

 Score =  965 bits (499), Expect = 0.0
 Identities = 548/569 (96%), Gaps = 9/569 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaggggtccccaaggcccaaaggtgaaacaccagggccttatagaacccagtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaggggtccccaaggcccaaaggtgaaacaccagggccttatagaacccagtg 264

                                                                       
Query: 65  aagtatacaatgcattagcctgaatcagtcagaagagactggtgcaagagagggaaaagc 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagtatacaatgcattagcctgaatcagtcagaagagactggtgcaagagagggaaaagc 324

                                                                       
Query: 125 tgaagggcctggacagaagctgtacaaaatcgtgagttgctggagaccatttggattatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaagggcctggacagaagctgtacaaaatcgtgagttgctggagaccatttggattatg 384

                                                                       
Query: 185 atagtgggagcctgcccagggccctctgtgataactcacatccagcagaactatttggag 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||        
Sbjct: 385 atagtgggagcctgcccagggccctctgtgatatctcacatccagcagaact-------- 436

                                                                       
Query: 245 agt-tgtaagatagggaaactcacagagcaatggccaatctgtgactgggtcattgtgtg 303
           ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 437 agtatgtaagatagggaaactcgcagagcaatggccaatctgtgactgggtcattgtgtg 496

                                                                       
Query: 304 cttgctccatgctctattaggaagagaaagctgggcttgttacagggctgtactttatat 363
           ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| 
Sbjct: 497 cttgctccatgctctattaggaagagaaatctgggcttgctacagggctgtactttatag 556

                                                                       
Query: 364 tggaagtgttatggttttcttcagacaagaaattgtaatttccataactgtgcccctgaa 423
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 557 tggaagggttatggttttcttcagacaagaaattgtaattcccataactgtgcccctgaa 616

                                                                       
Query: 424 tatcattagcttccaatattttagaccaagtctttacaaagttcaataaccgacatcatt 483
           ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 617 tatcattagcttccaatattttagaccaagtcttttcaaagttcaataacccacatcatt 676

                                                                       
Query: 484 ttcctgtaaaggcagataaaacatggatgaaaattatccatcatccaaagaaaccatgta 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttcctgtaaaggcagataaaacatggatgaaaattatccatcatccaaagaaaccatgta 736

                                        
Query: 544 gatagcttgtccagaatcatgcttaagag 572
           ||| ||||||||| |||||||||||||||
Sbjct: 737 gatggcttgtccaaaatcatgcttaagag 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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