BAC Information

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BAC

Clone NameMSMg01-374L17
Chromosome7 (Build37)
Map Location 6,346,037 - 6,346,466
singlet/doubletsinglet
Overlap geneZfp28
Upstream geneV1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78
Downstream geneLOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374L17.T7 (MSMg01no374_l17.b1)MSMg01-374L17.TJ (MSMg01no374_l17.g1)
ACCAG480456AG480457
length783766
length of high quality
(start - end)		326 (49 - 374)430 (56 - 485)
definitionCHROMAT_FILE: MSMg01no374_l17.b1 PHD_FILE: MSMg01no374_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:03 2005CHROMAT_FILE: MSMg01no374_l17.g1 PHD_FILE: MSMg01no374_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:04 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTCAAGTTTTGTAAAAGAATTGTGTTGAAATTTTGGTGGGG
ATTGAATTGAATCTGTAGATTGCTTTTGGTAAGATGGCCAATTTTTACTA
TCTTGATCCTATCTATCCATGAGCATGGGAGATCTTTCCATCTTTTGCTA
TCTGAAGTTCTTGTCATACAGGTCTTTCACTTGCTTGGTTAGAGTCACAC
CAATGTATTTTATGTTATTTGTGACTATTGTGAAGGGTGTCGTTTCCCTA
ATTTTTTGCTCAGCCCATTTATCATTTATAAAGAAAGGCCCCTGGTTTTT
TGGGGTGTGTGTGTGGGGTGTGTNNNNNNNNNNNNNNNNNTNNNTTTTTT
TTTTTTTTTTTTTTNCCCCCCCCTCCCCTNTTTTTCCTCTCTTTTTTTTT
TTCTTTCCTTTTTCCCCCCTTCTTTCCCCTTTTCCTTTCTCTTTCTTCTT
CCCTTCTCTTTTTTTCCCCTTTTCTTTTTCTTTTTCTTTTTCCCTTTTTC
TTCTCCTTCTTCTCCTTTCCCTTTTTCCTCTTTCTTCCTTTCCTTCCTCC
CTTTTTTTTCTTTTTTCCTTTCTTTCCTTCCTCTCTCCTCTTTTTCTTTT
TCCTTTCCTTTTTTTCCTTTTCTTCTTTTTCTCCCCCTCTCTTTCCCTTT
CTCCCCCCCTTCCCTTTTCTTTTTTTCCCCCCTTTCCTCTTCTTTTCCTT
TTCCCTTTTTTCCTCTCTCTTTTCCTTCCCCTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTGGTGAACGGTAAGGGAGGAGCTCTGGGTGAAAGTTTTCTTAC
ATTCATTACATTGGAAAAGTTTTTTTCCTGAATAGATTCCGGTTTCCTTT
ACGACTACTGGATTTGGGGAGAAACTTTTACCTGAGTCACAGTTATGACT
TCTCTTGTCTGAACTGTTCAAATGAAACCATCTTCCAGATTCGATACACA
TACCATCTCTCCCCTCTGAGAAGGCTCTGTTTGGAGTGACTGTCTCTTGC
TCATTCCTTTCAAACGTACACTCAGAATCCTGATCTCTGAAAGTGGAGCA
CTCAAGTTTAGTGCTCCAAGCTCTGCCTGTTACCCGTTCAGCACGTGAGT
CCTGCCTTGGAAGCAGATCCTGGGCTTCCTGTACAGACTGCTGGCCTGAA
ATAGACCAAGAAAACACATCTCCTTTATTATGTATCAAGAGGAAGATATC
TGCTTCCGTCTGCTTGAAAATAAACTCTGTCTGCCCTGTCTTGCTGGACG
AAGGAGTCCCTCGGAATACACTTTTTGTTTCCCTGCAAAACTTGAGTCCA
AATTTCCAAACTGGCACTTCCCCTGAGACGAGAAGCATACTCCTCAATTT
GTTCTATAGGTTTTACCCTCCCTCCTCCCCTTTTTGTATTCTCTCCTCGC
TTTCTTTTTTCTCTTTTTTTTCTTTTTTCTTTTTCCTCTTTTCCTCTCTT
CGTTCTTGTTCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_l17.g1 MSMg01no374_l17.g1 CHROMAT_FILE:
MSMg01no374_l17.g1 PHD_FILE: MSMg01no374_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:04 2005
         (430 letters)



>mm_chr7_6345837_6346666
          Length = 830

 Score =  777 bits (402), Expect = 0.0
 Identities = 423/430 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggtgaacggtaagggaggagctctgggtgaaagttttcttacattcattacattgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tctggtgaacggtaagggaggagctctgggtgaaagttttcttacattcattacattgga 571

                                                                       
Query: 61  aaagtttttttcctgaatagattccggtttcctttacgactactggatttggggagaaac 120
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 570 aaagtttttttcctgaacagattccggtttcctttacaactactggatttgaggagaaac 511

                                                                       
Query: 121 ttttacctgagtcacagttatgacttctcttgtctgaactgttcaaatgaaaccatcttc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 510 ttttacctgagtcacagttatgacttctctcgtctgaactgttcaaatgaaaccatcttc 451

                                                                       
Query: 181 cagattcgatacacataccatctctcccctctgagaaggctctgtttggagtgactgtct 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 450 cagattcgatacacataccatctctcccctctgagaaggctctgttcggagtgactgtct 391

                                                                       
Query: 241 cttgctcattcctttcaaacgtacactcagaatcctgatctctgaaagtggagcactcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cttgctcattcctttcaaacgtacactcagaatcctgatctctgaaagtggagcactcaa 331

                                                                       
Query: 301 gtttagtgctccaagctctgcctgttacccgttcagcacgtgagtcctgccttggaagca 360
           ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 330 gtttagtgctccaagttctgcctgttacccgttcagcatgtgagtcctgccttggaagca 271

                                                                       
Query: 361 gatcctgggcttcctgtacagactgctggcctgaaatagaccaagaaaacacatctcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gatcctgggcttcctgtacagactgctggcctgaaatagaccaagaaaacacatctcctt 211

                     
Query: 421 tattatgtat 430
           ||||||||||
Sbjct: 210 tattatgtat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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