BAC Information

Click to search

BAC

Clone NameMSMg01-376D21
Chromosome7 (Build37)
Map Location 145,032,123 - 145,032,463
singlet/doubletsinglet
Overlap genenone
Upstream geneMgmt, EG621804, Ebf3, 9430038I01Rik, Txnl2
Downstream geneLOC435235, Tcerg1l, LOC100043290, Mapk1ip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376D21.T7 (MSMg01no376_d21.b1)MSMg01-376D21.TJ (MSMg01no376_d21.g1)
ACCAG481604AG481605
length771751
length of high quality
(start - end)		422 (48 - 469)409 (76 - 484)
definitionCHROMAT_FILE: MSMg01no376_d21.b1 PHD_FILE: MSMg01no376_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:05 2005CHROMAT_FILE: MSMg01no376_d21.g1 PHD_FILE: MSMg01no376_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTTACGAAGCCTTCTAGCTGTACTATTGTAAAATGAGTACCAC
AGGGGCATAGCTTCATGCAGCGGCCCATGGTCAGTACCCCAGCCCAGACA
CTGCCTGGATGCCCTTTGAGTCACAGCTCTGTCCCACTCTCCCCTCCCCT
CCCTTCCCTTTCCCCTTTCTCCCCTCCCCTCCCCTCCCCTCCCATACCCC
TCCCTCCCTTGAAGGTTAGCATTGTCTTGGTGTTAAAGTCCCAGTTCACA
TTAATGCAATCATCCTCCATCAGTCTTCCTGCCTGACTTTGATGAACCAG
TCTGCCTCCATCTTAGACTTGAGAGCCACCTTGTAGTAAAGACAGCTCAG
CTCCTTGTTGCTTAGGATTAAACCTCTGTTTCTCAAGGTTTGGGCTATGC
TGCACCTGTAACCTTGAAGAGAAATGGTTCTGTCCTGCCTGTTCCAGGAA
GCAGCAACCCGGTCTCTGTTTCAAAAAGTTAATCACCAACTTGCAACCAT
GGCTTACTTTAAAAGGGGTTTTATGACTAACTTTGTTATGCTTATGATCT
GCTCCTGTAAACACGCCCAACCAACCCCCCCCAGCCCGGTTTTGGAAACC
CCCCACCCCAAAGTTAAAAAAAAGTTTGCCCTTCCTTCAATCCGCGGGGT
AACACTCTCAAACCTCCCCTTAAAGGGGTGGGAACCCCCATGTAACCCAA
ATAAAAAACTTCGCTTTTAAT

NCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCAT
GAATGGGTGTTGAATCTTGTCAAATGCTTTTTCTGCATCTAATGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATG
GATTTTTGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTG
GTCAGGATGGATGGTTGCTTTAATATGTTCTTGGATTCGGTTAGCCAGAA
TTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAG
TTCTCTATCTTTGTTGAATCTTTCTGTGGTTTAGGTATCAGAGTAATAGT
GGCTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAA
TAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACA
CTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTA
ATAACTGCTTCCATTTCTTTTAGGGATATGGGACTGTTATAAGGTCAACT
TTGACCCGACTCCCCTTTGTTACCCTGGATCTGGCCAAAAAATTGGCCTT
TTCCCCCCCGCTTTTCCAGTTTGTTGAAAAAACCCTTTTTTAAAAAACCA
AACGGGTTTTTGGATTCCCCCGACCCGGGTTTACTTCCCTTTTTCTTTCG
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_d21.b1 MSMg01no376_d21.b1 CHROMAT_FILE:
MSMg01no376_d21.b1 PHD_FILE: MSMg01no376_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:05 2005
         (422 letters)



>mm_chr7_145032123_145032944
          Length = 822

 Score =  629 bits (325), Expect = 0.0
 Identities = 335/341 (98%), Gaps = 5/341 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttacgaagccttctagctgtactattgtaaaatgagtaccacaggggcatag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ggaattccttacgaagccttctagctgtactattgtaaaatgagtaccacaggggcatag 282

                                                                       
Query: 64  cttcatgcagcggcccatggtcagtaccccagcccagacactgcctggatgccctttgag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 cttcatgcagcggcccatggtcagtaccccagcccagacactgcctggatgccctttgag 222

                                                                       
Query: 124 tcacagctctgtcccactctcccctcccctcccttccctttcccctttctcccctcccct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tcacagctctgtcccactctcccctcccctcccttccctttcccctttctcccctcccct 162

                                                                       
Query: 184 cccctccc-----ctcccatacccctccctcccttgaaggttagcattgtcttggtgtta 238
           ||||||||     |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 cccctcccctcctctcccatacccctccctcccttgaaggttagcattgtcttggtgtta 102

                                                                       
Query: 239 aagtcccagttcacattaatgcaatcatcctccatcagtcttcctgcctgactttgatga 298
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 101 aagtcccagttcacattaatgcgatcatcctccatcagtcttcctgcctgactttgatga 42

                                                    
Query: 299 accagtctgcctccatcttagacttgagagccaccttgtag 339
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  accagtctgcctccatcttagacttgagagccaccttgtag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |