BAC Information

Click to search

BAC

Clone NameMSMg01-376F08
Chromosome7 (Build37)
Map Location 112,872,108 - 112,872,641
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646
Downstream gene1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376F08.T7 (MSMg01no376_f08.b1)MSMg01-376F08.TJ (MSMg01no376_f08.g1)
ACCAG481674AG481675
length765752
length of high quality
(start - end)		550 (44 - 593)531 (74 - 604)
definitionCHROMAT_FILE: MSMg01no376_f08.b1 PHD_FILE: MSMg01no376_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:12 2005CHROMAT_FILE: MSMg01no376_f08.g1 PHD_FILE: MSMg01no376_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAATCTGTACTCGCTGTTGGTTAAATGAGTTCAGAGGAAGTGCTTTC
ATTTCTTTCCTTAATGGGACACCGATCCATTATTGGTAACAGAGTTAATC
ACTAATGCCCACAATTCTCTGGTGCTTGGGGCCAGCTGAACCCAAAGATG
CTGTTCAATGTGACCAAGTGTAGGTGAGATGCATACAGTCAATGTAATAT
CCAAAATGAATTGAAGACCACCCAGTACCTTCCCCCTTTCCAAACTGTAC
TAGCAGGCCAAGTACAGAGCCAGAAAAGGAAGCTGGCTGACTAAACAAAT
GTAAAAACATAGTTTTAGCGGTCAATTTGATTAAGCTTGCAACTACCAAA
ACAACATTAGCTGTTCTCAGAGAAATAACCATAACAAGATTAGCAATTCT
CCTGCCCCACCCCACACACACACACTGAATTTTGAGAAAGACCACAAACC
ACCCCTGACCTTGTCACTAGAATTTCCCTGACGTTGATGGCTCTGATGCT
AATAGCTGACCTATAAGTTCAAAATGTACTATTACTTTGCTGACCCAATC
ATAAAACCCCCCCGTGGGTGCAAGAAAGACTATGCCAAAAGGGTACTTAT
TCACTATATAAACCCAACCAATGTCCCCAAGAGTTACTTTGCTATACCAA
AGGTGAAACCTGGTATCCCAATTCTGCCCCTTTAAAAAGGTTTAAAAAAA
GGGTTTTCTTTCTTG

TTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAAAGTCAGAATGCTGATAGGAGTGT
AGACAATAAAGAAGATAATAAGGTCTCTCTTGGAACTGGACTACAGACCA
TTTTTAATTCCAGCAAAAAAAAAAAAAACTTTATATTTTAGTAGTATCCA
GTTTTTGCATGAGGCCAAACTTAAAGGCTCAGACATACAGCAGAGGGCAT
TTCAAGGCAGCATGGCATCAAGGCATGGCATGGTTATTGCTAGCTGCTTT
TAGTCAAATTTATAGCAAGAATTGTTACCAAAAGCCAAGTGTTAAAGTTT
GAAATTCTTTCAGTGTGAGCAGGAAAAAAAATTAAAGTTGAAGGCAAGAG
ATATATGGCTGTTGAAGAGATTCGGGCCATTTTATGAGTAGACTGTGTGG
TTGTGCATGACTACCATTGCCAGCCAGCACTTGGTAGATAGAGAAACAAG
GATTAAAAGTTCAATGTCAGTGTAGCTCCATAGTACATTCGAGTTCAGAC
TGACTATATGAAACCCTGTCTCANAGATAGAGGCTGAAGCAGCAACTCAG
TGGTCAAGAACAATTGTTGCTTTTGTAGAGGACCTGGATTTGGTTCCCAG
AATCCATATGGGACTCACAACTTTACATAACACTATTTCCAGTGAATCCA
ATGCCCTCTCTGGCCCTTCCCGGACTAAGTAATCCCCTTAAGGGCCATAC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_f08.g1 MSMg01no376_f08.g1 CHROMAT_FILE:
MSMg01no376_f08.g1 PHD_FILE: MSMg01no376_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:12 2005
         (531 letters)



>mm_chr7_112871821_112872753
          Length = 933

 Score = 1007 bits (521), Expect = 0.0
 Identities = 530/534 (99%), Gaps = 3/534 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaagtcagaatgctgataggagtgtagacaataaagaagataataaggtctctcttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 agaaagtcagaatgctgataggagtgtagacaataaagaagataataaggtctctcttgg 762

                                                                       
Query: 61  aactggactacagaccatttttaattccagc-aaaaaaaaaaaaaactttatattttagt 119
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 761 aactggactacagaccatttttaattccagcaaaaaaaaaaaaaaactttatattttagt 702

                                                                       
Query: 120 agtatccagtttttgcatgaggccaaacttaaaggctcagacatacagcagagggcattt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 agtatccagtttttgcatgaggccaaacttaaaggctcagacatacagcagagggcattt 642

                                                                       
Query: 180 caaggcagcatggcatcaaggcatggcatggttattgctagctgcttttagtcaaattta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 caaggcagcatggcatcaaggcatggcatggttattgctagctgcttttagtcaaattta 582

                                                                       
Query: 240 tagcaagaattgttaccaaaagccaagtg--ttaaagtttgaaattctttcagtgtgagc 297
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 581 tagcaagaattgttaccaaaagccaagtgttttaaagtttgaaattctttcagtgtgagc 522

                                                                       
Query: 298 aggaaaaaaaattaaagttgaaggcaagagatatatggctgttgaagagattcgggccat 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aggaaaaaaaattaaagttgaaggcaagagatatatggctgttgaagagattcgggccat 462

                                                                       
Query: 358 tttatgagtagactgtgtggttgtgcatgactaccattgccagccagcacttggtagata 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tttatgagtagactgtgtggttgtgcatgactaccattgccagccagcacttggtagata 402

                                                                       
Query: 418 gagaaacaaggattaaaagttcaatgtcagtgtagctccatagtacattcgagttcagac 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gagaaacaaggattaaaagttcaatgtcagtgtagctccatagtacattcgagttcagac 342

                                                                 
Query: 478 tgactatatgaaaccctgtctcanagatagaggctgaagcagcaactcagtggt 531
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 341 tgactatatgaaaccctgtctcaaagatagaggctgaagcagcaactcagtggt 288


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 933
Length adjustment: 10
Effective length of query: 521
Effective length of database: 923
Effective search space:   480883
Effective search space used:   480883
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |