BAC Information

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BAC

Clone NameMSMg01-376I18
Chromosome7 (Build37)
Map Location 134,932,759 - 134,933,120
singlet/doubletsinglet
Overlap geneSetd1a
Upstream genePpp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c
Downstream geneHsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376I18.T7 (MSMg01no376_i18.b1)MSMg01-376I18.TJ (MSMg01no376_i18.g1)
ACCAG481838AG481839
length750723
length of high quality
(start - end)		459 (48 - 506)382 (79 - 460)
definitionCHROMAT_FILE: MSMg01no376_i18.b1 PHD_FILE: MSMg01no376_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:28 2005CHROMAT_FILE: MSMg01no376_i18.g1 PHD_FILE: MSMg01no376_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTTTGTTTACCAGGCTGACCTCAGATTCACAGAGATCTGCCT
GCTTCTGCTTCATGAGTGCTGAGATTAAAGACGTGTGTCACAATGCCCGG
TATAACGGTCCTTTTGAAGTAGTAAAAATGGAGATAGTATGAGGGTGACC
ATGATCATCAGCCACTGACTTAACAGGGGTCCACCTCTGGCATTTTTTAA
GCACTCACTACATGCCAAATGCTCTAGTAGTTAGTGGTCTAATTAGCTGA
ATCCAAACAACAATCTTCGAGGTAGTGTGGTTATTTTCAGAGAAGAAAAG
CATTGGCTCAGGCCCCGGCTCTTAGGGTGCTTGCCTGGAATGTATAAAGC
CCAAGGGTGGAGACAGAAGGATCAGAAGTCAATTCATGGCTGGCCTGGGT
TACATGAGACCCTGTCTCTAAAGGGTTAAAATAAAAAGAAAAAAAAATAG
AATCTCAGAATTTCATTAATTTTGCCAAGGAGCTCAGCAGAGAATCCATT
CTGGAATATAGGGTAGGCCCAGAGCCGTCAAGAAAATTTCGTGTCTTCTT
CCCTGGAAAGAAAAGAGCAAATTTTCCGAAAAGCGCCAGGCTTCGGAACA
AAAAAGGGTTTTTCCCCTGTAAACCAAGGGGTTCGGCTCCTAAAAGAGCC
GGATCGATGGTAAGCAATTTTTAATGCGGGCAGGACGCGCCCTTTGTTTT


NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGATTGCTGTGCAGACAACA
GTGGCTCTTTCCTCAGGTCTCGCATACCAGCAGAAGTTATTACCTATTTC
ATTGTCCCTAAAATGTAATGCAGTGACACAAAGGGACTTGTGTAACCTGT
CTCTTGCCCTTCTTCTATCCTCTTCTAACAAGGTTTTTTTTGTTTGTTTG
TTTGTTTTTTGTTTTGTTTTGTTTTGAGACAGGGTTTCTCTGTGTAGCCC
TGGCTGTCCTGGCACTCACTTTGTATATCAGGCTGGCCTTGAACTCAGAA
ATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACC
ACACCCGACCAAAGCAGGGTTTTAATGTACATTTCTTCTAAAAAAATTAT
TTAATTTATGCATATGCTTCAGTGTATATATGTGCACTATATACATGTAG
AATTGGAAAAAAAATGTGCTTGGATCTCCCGGAAATGAAGCTATACGCCG
TTGTGACCCCCTAGTACGCTCTGTGAAACAAACTTTGTTCCTCCGGAAAA
AAACCCTTGTAATTAAAAACTGGAATTACCCTTCCACTACTCCCCACTTT
TCAATTAACCTTTTTTACTTCCTCTTCCTCTTTCATACATTCCTCTCTCC
TCTCTTTCCTTCCTACTACATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_i18.g1 MSMg01no376_i18.g1 CHROMAT_FILE:
MSMg01no376_i18.g1 PHD_FILE: MSMg01no376_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:28 2005
         (382 letters)



>mm_chr7_134932759_134933546
          Length = 788

 Score =  607 bits (314), Expect = e-178
 Identities = 352/374 (94%), Gaps = 18/374 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgattgctgtgcagacaacagtggctctttcctcaggtctcgcataccagcagaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cttgattgctgtgcagacaacagtggctctttcctcaggtctcgcataccagcagaagtt 303

                                                                       
Query: 61  attacctatttcattgtccctaaaatgtaa------tgcagtgacacaaagggacttgtg 114
           ||||||||||||||||||||||||||||||      ||||||||||||||||||||||||
Sbjct: 302 attacctatttcattgtccctaaaatgtaatctgtctgcagtgacacaaagggacttgtg 243

                                                                       
Query: 115 taacctgtctcttgcccttcttctatcctcttctaacaaggttttttttgtttgtttgtt 174
           |||||||||||||||||||||||||||||||||||||||||||||||   ||| ||||||
Sbjct: 242 taacctgtctcttgcccttcttctatcctcttctaacaaggtttttt---ttt-tttgtt 187

                                                                       
Query: 175 tgttttttgttttgttttgttttgagacagggtttctctgtgtagccctggctgtcctgg 234
           |||||||||||        |||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tgttttttgtt--------ttttgagacagggtttctctgtgtagccctggctgtcctgg 135

                                                                       
Query: 235 cactcactttgtatatcaggctggccttgaactcagaaatccacctgcctctgcctcccg 294
           ||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 134 cactcactttgtagaccaggctggccttgaactcagaaattcacctgcctctgcctcccg 75

                                                                       
Query: 295 agtgctgggattaaaggcgtgcgccaccacacccgaccaaagcagggttttaatgtacat 354
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 74  agtgctgggattaaaggcgtgcgccaccacacccgactaaagcagggttttaatgtacat 15

                         
Query: 355 ttcttctaaaaaaa 368
           ||||||||||||||
Sbjct: 14  ttcttctaaaaaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 788
Length adjustment: 9
Effective length of query: 373
Effective length of database: 779
Effective search space:   290567
Effective search space used:   290567
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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