BAC Information

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BAC

Clone NameMSMg01-377B22
Chromosome7 (Build37)
Map Location 13,324,783 - 13,325,183
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079
Downstream geneLOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377B22.T7 (MSMg01no377_b22.b1)MSMg01-377B22.TJ (MSMg01no377_b22.g1)
ACCAG482276AG482277
length797780
length of high quality
(start - end)		404 (44 - 447)344 (74 - 417)
definitionCHROMAT_FILE: MSMg01no377_b22.b1 PHD_FILE: MSMg01no377_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:12 2005CHROMAT_FILE: MSMg01no377_b22.g1 PHD_FILE: MSMg01no377_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGGGGGATGGAGGAGGCACAGTAGCTCATTAAAGGGGTAGTTATTCC
TCCTATCATTTTTGCACCACTTAAGGTGAACTAGCCTAGTCCTGTAGTCA
GATGATTGACCAACACAACTACACACCTGGATTAACTCTTCTGTGTTTGG
AATAGCTTGAAATATTAGATTTCCACCCATGCCAGAGAAATAGTTTCCCT
AATGTGTCTCCACAGAGCCCTGATTATAATATCAGGCTTCAATAATATCA
TGCCACCACATATTCAGGGAAAGGTCATGAAGATATAGAACTTTATGTTT
GCCTTTCTGAGTGTCAGTCATCCTTGGTTCATTCTCTCCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTTTCTCTCTCTCTCTCTCTCTCTTTCTTTCTCTCTTTCCCCTTTCCTCC
CTCTCTCTCCTCTAAACTCTTTCTCCCCCCTTTTTCCTTTTCCTCCCCTT
TCTTTTCTCTCCCCCTGCCCCAAAACCCCTCCTTTCCTCCCTTCTTTATC
CCTCTTCCTTTCTTTATACCTTTTCCTTATGTACTTTGCCTTTCTTTCCC
TTTTATTCCTATCTTTTCCCCCTTTTTTCCTCTTTTTCCTCCTTTTTCCC
CTCTCACTTTTTCTTTTCCTTTTCTTTTTTCTCCCTTTACTCCCCCTTTT
TTAACTCCTTTGTTTTCCCACCACCTCTTCTTTTTTCTCCCTATTCT

ATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGAGATCCTCCTTCTTCTGCCTCCCG
AGTACTGGGATTAAAGGCTTGTGTCACCATTGTGTGGCTTTTTTTTTTTT
TCTTTTTCTTTTAATGTGAGTGTGTGGGGGCTGAAGAGATGGCTCAGTGG
TTAAGAGTCACCAACTGTTCTTCCAGAGGCCCTGAGTTCAATTCCCAGCA
ACCACATGGTGGCTCACAGCCATCTGTAATGGGATCTGATGCCCTCTTCT
GGGGTGTCTGAAGACAGCTACAGTGTAATTACATATAATAAATAAGTAAT
GTGAGTGTGTGCTACATGTGTGTGGATGACCTCAGAGGTCAAAAATGGGT
ATCAGATTCCTGACTCCACAGTTACAGGCAGTTGTGATTGGCCTGACACA
GGGACTATGAACCAAATTCGATCTTCTAAACAATGGGTTCCACTATTTTT
GGGTCCCTCAAAATACCGCAACTACACTATTTTAGTTATGCATCCACCCA
TATCCTTATTTAATCTCGGACATTACCCCGAGTGCTAACTCTATGCGTTG
TCAGATGCTACCATCTTTTTTATTACTTTTCTTTAATATCTCCATACTTT
TTCCCCGCTTTTTCCCTACCCCCTGCGCTCCCCTATTTTTCTATTAATTT
TTCATTAGGTCCCTAATAAAATCCCCTCCCCCCCCCACCCATTTTTTTCC
ACCTTTCATACTTCTCCCCTTTTTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_b22.b1 MSMg01no377_b22.b1 CHROMAT_FILE:
MSMg01no377_b22.b1 PHD_FILE: MSMg01no377_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:12 2005
         (404 letters)



>mm_chr7_13324580_13325383
          Length = 804

 Score =  729 bits (377), Expect = 0.0
 Identities = 395/401 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgggggatggaggaggcacagtagctcattaaaggggtagttattcctcctat 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgggggaaggaggaggcacagtagctcattaaaggggtagttattcctcctat 263

                                                                       
Query: 64  catttttgcaccacttaaggtgaactagcctagtcctgtagtcagatgattgaccaacac 123
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct: 264 catttttgcaccacttaaggtgaactagcctagtcctatagccagatgattgagcaacac 323

                                                                       
Query: 124 aactacacacctggattaactcttctgtgtttggaatagcttgaaatattagatttccac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aactacacacctggattaactcttctgtgtttggaatagcttgaaatattagatttccac 383

                                                                       
Query: 184 ccatgccagagaaatagtttccctaatgtgtctccacagagccctgattataatatcagg 243
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccatgccagagaaatagtttctctaatgtgtctccacagagccctgattataatatcagg 443

                                                                       
Query: 244 cttcaataatatcatgccaccacatattcagggaaaggtcatgaagatatagaactttat 303
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttcaataatatcatgccatcacatattcagggaaaggtcatgaagatatagaactttat 503

                                                                       
Query: 304 gtttgcctttctgagtgtcagtcatccttggttcattctctcctctctctctctctctct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtttgcctttctgagtgtcagtcatccttggttcattctctcctctctctctctctctct 563

                                                    
Query: 364 ctctctctctctctctctctctctctctctctctctctctc 404
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctctctctctctctctctctctctctctctctctctctctc 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 91
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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