BAC Information

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BAC

Clone NameMSMg01-377D12
Chromosome7 (Build37)
Map Location 26,891,559 - 26,891,927
singlet/doubletsinglet
Overlap geneLOC623532
Upstream genePou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047
Downstream geneCyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377D12.T7 (MSMg01no377_d12.b1)MSMg01-377D12.TJ (MSMg01no377_d12.g1)
ACCAG482352AG482353
length786759
length of high quality
(start - end)		374 (51 - 424)513 (80 - 592)
definitionCHROMAT_FILE: MSMg01no377_d12.b1 PHD_FILE: MSMg01no377_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:19 2005CHROMAT_FILE: MSMg01no377_d12.g1 PHD_FILE: MSMg01no377_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCATGAAAACAACATGGGGAGTAGATAGGGTATATAGAAT
CTGGTAGACATACTGTGGTCTACATTGTGGAGAGCAGCAACAATGTTGAA
TCTGTGACACCTATAACGTCAAAAGCTGGGATGTCAGTAAGGGCATTAGA
GAGAAGGCCAAGTGAAGCCAAAGACCTCAAGTCTGTCTTCTTTCCTGATG
AGACCTAGGTAAAACTGGTAAGTGGGATCCAGGTTTAAGAGGAAGGTCCT
ATCAATAGGTCAGTTTGTAAGTTCTGGGTCTTGTCTCTGTGCCTGGAGGT
GAGATATGAGTTACTGACATATTTTACATGGGGGCTCAGCCTCTTCTAGT
CTTGTGTGGGTATGAGGTGTAATGGGAGGCCCTAGTGTACAAGAGCGAGG
CTTTCCTGGTCTATGACTACATGGCCATTATTGATCCTTTCTTCCTCTAA
CTGCTGTGCGTCGTTTTTGCTATGACTGCCCCCCCTTATCCCATCTTTCC
TGTCTTTCTCTTCGTCCTTCCTATCCGTCACTTCTTCTATTGTTCTCCCT
CTTTCCATCTTTCTCCTATCCCTTCCTTTCTCATCTTTTACCACATTTTC
CCCCCGTTTTTCCCATTTTTTCCCCTTTTATCCCCCGCCCATTTTTCCAT
TCTCCCTTTTACTTACCCCAATATTATCCCCCATATTTCACTCCTTTCTC
TCCCCCCCACCCCTTACTCTTTTTCTCCCTCATTCN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGCATTTGACATTTAAAA
AAATCTGGAAAGTGGAGAATGTTGACAGATCTCAGAACAATTAAGGTTAT
TCAGCCAATGGGTTCTCTAGAGCCTATAGTCCCATTGCCTTCCTTGTTGC
CTAAGGCCTGTCAGTGATTGACCTAGAAAATTGCTTTTTCACAATTGCTT
TACATGAATATGATAAGGAAAGGTTTGCTTTCTCAGTACTTGCTTGTAAT
AGAATTTGTCCAATAAAAAGATATCATTGGAAAGTCCTGCTAGGAATGTA
CAACAGCCACTGGATGTACCTCATTAAAAAATTCCTCAATCCATAATTTA
CCATTATATAGATGATATGTTATTTTCTGATAATATACAAAAAGCCTTGG
AAAGAATGTTTGATGAAATAAGGAAATCTTGCCTCACTGGGAATTATAAA
TTATCCCTGAAAAAAATACGAAGAAGAGACTATATTAACTATCTACAATA
TGAAATAAGTTACAAAAAAGTTATACCACCAAAGGTACAAATTAGGAGAG
ACCAATTAAGGATGCTTTATGATTTCCAGAAATTATTTGGAAGGTATAAA
CTGGCTTACGCCTACAATTGACTTGACTACTCCGGAGGAATTTATTTTAA
ACCTTACCAGGGGAAAAAATTTTTTATTTCCCCGAAAATTATAACCCCGG
CTGAAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_d12.b1 MSMg01no377_d12.b1 CHROMAT_FILE:
MSMg01no377_d12.b1 PHD_FILE: MSMg01no377_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:19 2005
         (374 letters)



>mm_chr7_26891352_26892127
          Length = 776

 Score =  530 bits (274), Expect = e-155
 Identities = 346/370 (93%), Gaps = 4/370 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttctcatgaaaac-aacatggggagtagatagggtatatagaatctggtagacatactgt 66
           |||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctcatgtaagccaacatggggagtagatagggtatatagaatctggtagacatactgt 267

                                                                       
Query: 67  ggtct-acattgtggagagcagcaacaatgttgaatctgtgacacctataacgtcaaaag 125
           || || | |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 268 ggactga-attgtggagagcagcaacaatgttgaatctgtgacacccataacatcaaaag 326

                                                                       
Query: 126 ctgggatgtcagtaagggcattagagagaaggccaagtgaagccaaagacctcaagtctg 185
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctgggatgtcagtaaggacattagagagaaggccaagtgaagccaaagacctcaagtctg 386

                                                                       
Query: 186 tcttctttcctgatgagacctaggtaaaactggtaagtgggatccaggtttaagaggaag 245
           | ||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||
Sbjct: 387 tgttctttcctgatgagaccccggtaaaactggtaagtgggatccaagtttaagaggaag 446

                                                                       
Query: 246 gtcctatcaatagg-tcagtttgtaagttctgggtcttgtctctgtgcctggaggtgaga 304
           || ||||||||||| ||||| |||||| |||||||||||| ||||||||||| |||| ||
Sbjct: 447 gtgctatcaatagggtcagtgtgtaaggtctgggtcttgtttctgtgcctgggggtggga 506

                                                                       
Query: 305 tatgagttactgacatattttacatgggggctcagcctcttctagtcttgtgtgggtatg 364
           |||| | | |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 507 tatggggtcctgacatattttacatgggggctcagcctcttctagtcctgtgtgggtatg 566

                     
Query: 365 aggtgtaatg 374
           ||||||||||
Sbjct: 567 aggtgtaatg 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 776
Length adjustment: 9
Effective length of query: 365
Effective length of database: 767
Effective search space:   279955
Effective search space used:   279955
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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