BAC Information

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BAC

Clone NameMSMg01-377P01
Chromosome7 (Build37)
Map Location 149,278,333 - 149,278,739
singlet/doubletsinglet
Overlap genenone
Upstream geneSigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8
Downstream geneLOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377P01.T7 (MSMg01no377_p01.b1)MSMg01-377P01.TJ (MSMg01no377_p01.g1)
ACCAG482904AG482905
length783790
length of high quality
(start - end)		412 (49 - 460)279 (79 - 357)
definitionCHROMAT_FILE: MSMg01no377_p01.b1 PHD_FILE: MSMg01no377_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:18 2005CHROMAT_FILE: MSMg01no377_p01.g1 PHD_FILE: MSMg01no377_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTGGGGTTCGAAATAGATATGTAGGGCCAGTTTTGAGAAGG
TCAGCAGGGCACAGACAGACCATGCAATATCTTAGCAAAGCAACATACAT
TCCCAGTTCTTCCCAGGGAGAACAGCTATCAGCCTGTTCTACAGGAGCCT
TGAAGTGGGTTGGGGAGGTGGTCAAGACCCCTTATGCAGAGGCTGTAGGC
CTTCATCAAAGGATTTTGAGCCAGGAGACAAGCAATCCTAAATTCAAAGT
TAAGAGGAGCCTTTCCCAGGCCACACCCCTCAGGGAGGTCCCAGGCAACC
CCCTTTGCTGAAGGCTAGGTCCACAGCTCAGGCCTTGTGGCACTGTTCCC
TGGGCACAGGAACACTCCCCCCCCCCCCATTCACAGATGCATGCCTTATT
GACAATCCATCTTGTCCCTGAGCGCAATTACACTTGCGTCCCTCCGCACA
TACTGTAAGACTTATAGCCTCCTGGAGTGCATGATTGAATACTCCGTCGG
ATTCTTAACCTTCCGGCCCCCTACGTTTCCGCGGCCCCCTTCCCCATCGT
TTCCATCTTTGCCCTTCTTCCCTGGGGTCCCCCCCTATCATGTTCCGGCT
GCCCGCAGCTCTATTTTCGATTCCCCCCCACTTGTATCCTCCTCCCTGGT
CTGTTCCTTTTAAGGTTTCCACTGGTCCCGTTGTTCCCTTACCCTTCCTT
TATTTCCCTTCCTTTTTCCACTTTTTCCTCTCT

NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGTATTTCTTTAAGGGAGC
TATTTATGTCCTTCTTAATGTCCTCTATCATCATCATCATGAGAAGTGAT
TTTAGATCTGAATCTTGCTTTTCTGGTTTGTTGGGGGGTATCCAGGACTT
GTTATGGTGGGATAATTAGGTTCTAATGATGCCAAGTAGCCTTGGTTTCT
GTTGCTTATGTTCTTACGATTGCCTCCCACCCTCTGGTTATCTCTAGTGC
TACCTGTCCTGGGTATGTCTGACTGGAGCCTGTCCTTCCTGTGATCCTGG
TTGTGTCAGAACTCTTCCAAGTCAAGCTGTCTCTGTGATCCCGTGATTCT
GGGATCCTACGATTATCCCCCCCCCGCCCGNGTCTGAGTTTTTTGTAGTC
CCGCCGTCCCTGTTACCCTGTTATTTCGGTGTGATCACTCTTCTGCACAC
CTGTTATTCTCCGACTTTTTGTTCCTTTTAACCCCCCGCCTTTTTCCCCC
CCTTTTCGCCCTTTTTTTCTTTCCTCTCTTCCACCCTCTCTCTCTCCTAT
CTTTTTTCATTCTTTTTCTTCCCTCTCTCCTCTCACCCCCCCCCCCCCTT
TTCCCCCCCCTTTACCTTCTTTTTTCTTTATTCTCCCCTCACCTCTTCCC
CCCCTCTTCCTATTTCTCTCTTTCCCTTTTTTCTCCCCCTCTTTTTCCCC
CCCCCTCCACCCATTTTTTCTTTCTTTTCTCTCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_p01.b1 MSMg01no377_p01.b1 CHROMAT_FILE:
MSMg01no377_p01.b1 PHD_FILE: MSMg01no377_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:18 2005
         (412 letters)



>mm_chr7_149278129_149278940
          Length = 812

 Score =  698 bits (361), Expect = 0.0
 Identities = 396/415 (95%), Gaps = 15/415 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgggg-ttcgaaatagatatgtagggccagttttgagaaggtcagcagggca 63
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattggggctt-gaaatagatatgtagggccagttttgagaaggtcagcagggca 263

                                                                       
Query: 64  cagacagaccatgcaatatcttagcaaagcaacatacattcccagttcttcccagggaga 123
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagacagaccatgtaatatcttagcaaagcaacatacattcccagttcttcccagggaga 323

                                                                       
Query: 124 acagctatcagcctgttctacaggagccttgaagtgggttggggaggtggtcaagacccc 183
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 324 acagctatcagcctgttctacaggagccttgaagtgggttggggaagtggtcaagacccc 383

                                                                       
Query: 184 ttatgcagaggctgtaggccttcatcaaaggattttgagccaggagacaagcaatcctaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttatgcagaggctgtaggccttcatcaaaggattttgagccaggagacaagcaatcctaa 443

                                                                       
Query: 244 attcaaagttaagaggagcctttcccaggccacacccctcagggaggtcccaggcaaccc 303
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 attcaaagttaagaggagcctttcctaggccacacccctcagggaggtcccaggcaaccc 503

                                                                       
Query: 304 cctttgctgaaggctaggtccacagctcaggccttgtggcactgttccctgggcacagga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cctttgctgaaggctaggtccacagctcaggccttgtggcactgttccctgggcacagga 563

                                                                  
Query: 364 acactcccc------ccccccccattcacagatgcatgccttattgacaatccat 412
           |||||||||      |       |||| |||||||||||||||||||||||||||
Sbjct: 564 acactcccctttgtac-------attcgcagatgcatgccttattgacaatccat 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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