BAC Information

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BAC

Clone NameMSMg01-378B07
Chromosome7 (Build37)7 (Build37)
Map Location 135,324,792 - 135,325,327135,318,329 - 135,318,788
singlet/doubletsingletsinglet
Overlap geneItgad
Upstream geneCd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax
Downstream geneCox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378B07.T7 (MSMg01no378_b07.b1)MSMg01-378B07.TJ (MSMg01no378_b07.g1)
ACCAG483012AG483013
length749743
length of high quality
(start - end)		540 (53 - 592)567 (80 - 646)
definitionCHROMAT_FILE: MSMg01no378_b07.b1 PHD_FILE: MSMg01no378_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:29 2005CHROMAT_FILE: MSMg01no378_b07.g1 PHD_FILE: MSMg01no378_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:29 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(135,324,792 - 135,325,327)(135,318,329 - 135,318,788)
sequence
NNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTGCCACGTACGATTGTAGGGACAACAATCCTTACAGA
AGGCCATCCATCCCCTGTGCTAATGTAGATATTTGCTGTTGTAATAATCT
GATGTGGTAGGCACTACTGTGATCCTCATCTTAGAGACAGGAAGCTGAAG
GCCAGAGAAATTAAGCTACTTGCCTAAATTCATCAGCTCGGAAGCGGCAG
AGCTGGGGTTCAGGGACAGGCACTTTGGTGCCAGAATGTAACCCTGAACC
AGCTTTCCTCCTGTGCTTTATAACACCCGAGAGAGTGTGTATTTAATGAG
GATTTGAGTGAATGATTGCAGAGTTGGGGATCCTTCCTCTGTTGAGTAAG
AAGGTATTTGGGACCCCAGGACACAGTTGAGGCCCATGCATGCATCTGAC
TCTTCTCTCTCACCGCAGAGTGTCCAGGACAAGAGATGGACATTGCTTTC
CTGATTGATGGCTCCGGCAGCATTGATCAAAGTGACTTTACCCAGATGAA
GGACTTCGTCAAAGCTTTGATGGGCCAGTTGGCGAGCACCAGCACCTCGG
TGAATACTGTACACTGTGGNCTGTGGTANGGTGACACAGGTGCAGGGAGG
AGGCCCGGCACAACTGGTGGGGGAAGAAGTGGAAGAGACAGTGACAGGGC
TAACCAAGTACAGTGTGCTAGTTCAGGGCTCATTTATGCTCTACCCCCC

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACCCCAGGGATTGACCCCAC
AGTGGAAGGAGCGAACTAACTCGGTAAGTTATCCTCTGACTCTCACCTGA
ATACCACATCCACACTCCTGAGCGCCCCCAACACGTGCACGCACACAAAC
TAAATAAAGATATAACGCTTAAAAAATAAACCAATAAAAGCACCCAACAG
ATGTGGTAGCTTATGCGTCTCATCTCAGCACTTGGGAGGCAGGCTCATGA
AGATACTGTAAATTTCATGGCCTGGCTGACATAGGGCGTTTCCAGCCAGC
CAGAGACACGCAAGACCCTGTCTCAAAGAGACAAAACAATGAATAAACCC
ATCATAGATGGCAACAGTTCAGGGAAATGTCCCCTCCAAGCCATTTCAAA
GGACATCAGGATCTGAAATTAGGCCATCTACTGTGCTAGCTCTGGAATGC
CTCACTCCCTCTTCTGGGGCTGGAGACTGAGTTAGAGCTTTGGACATGCT
AGGCTCTACATGCAGCTCAACATGACAGCCACTTGCTAGTGCGTGCAGGA
TCTCAGCATGCTCTCCTGATCCTTAAGTCGCACTCCCCTTTCTGATGACT
AAGCCCAAAGCCTCAGTGGGCCTCTACCTTTCAGAAAGTCTTTCTGCTCC
CTCATATCCCTTAGCAAGAATCTTTCCTCCCTGCGTCACCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_b07.b1 MSMg01no378_b07.b1 CHROMAT_FILE:
MSMg01no378_b07.b1 PHD_FILE: MSMg01no378_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:29 2005
         (540 letters)



>mm_chr7_135324588_135325527
          Length = 940

 Score = 1021 bits (528), Expect = 0.0
 Identities = 534/536 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgccacgtacgattgtagggacaacaatccttacagaaggccatccatcccct 64
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgccacgtacgattgtagggacaataatccttacagaaggccatccatcccct 264

                                                                       
Query: 65  gtgctaatgtagatatttgctgttgtaataatctgatgtggtaggcactactgtgatcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgctaatgtagatatttgctgttgtaataatctgatgtggtaggcactactgtgatcct 324

                                                                       
Query: 125 catcttagagacaggaagctgaaggccagagaaattaagctacttgcctaaattcatcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catcttagagacaggaagctgaaggccagagaaattaagctacttgcctaaattcatcag 384

                                                                       
Query: 185 ctcggaagcggcagagctggggttcagggacaggcactttggtgccagaatgtaaccctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcggaagcggcagagctggggttcagggacaggcactttggtgccagaatgtaaccctg 444

                                                                       
Query: 245 aaccagctttcctcctgtgctttataacacccgagagagtgtgtatttaatgaggatttg 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 aaccagctttcctcctgtgctttataacgcccgagagagtgtgtatttaatgaggatttg 504

                                                                       
Query: 305 agtgaatgattgcagagttggggatccttcctctgttgagtaagaaggtatttgggaccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtgaatgattgcagagttggggatccttcctctgttgagtaagaaggtatttgggaccc 564

                                                                       
Query: 365 caggacacagttgaggcccatgcatgcatctgactcttctctctcaccgcagagtgtcca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caggacacagttgaggcccatgcatgcatctgactcttctctctcaccgcagagtgtcca 624

                                                                       
Query: 425 ggacaagagatggacattgctttcctgattgatggctccggcagcattgatcaaagtgac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggacaagagatggacattgctttcctgattgatggctccggcagcattgatcaaagtgac 684

                                                                   
Query: 485 tttacccagatgaaggacttcgtcaaagctttgatgggccagttggcgagcaccag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttacccagatgaaggacttcgtcaaagctttgatgggccagttggcgagcaccag 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no378_b07.g1 MSMg01no378_b07.g1 CHROMAT_FILE:
MSMg01no378_b07.g1 PHD_FILE: MSMg01no378_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:29 2005
         (567 letters)



>mm_chr7_135317822_135318788
          Length = 967

 Score =  835 bits (432), Expect = 0.0
 Identities = 453/460 (98%)
 Strand = Plus / Minus

                                                                       
Query: 108 gcacgcacacaaactaaataaagatataacgcttaaaaaataaaccaataaaagcaccca 167
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 967 gcacgcacacaaactaaataaagatgtaacgcttaaaaaataaaccaataaaagcaccca 908

                                                                       
Query: 168 acagatgtggtagcttatgcgtctcatctcagcacttgggaggcaggctcatgaagatac 227
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 acagatgtggtagcttatgtgtctcatctcagcacttgggaggcaggctcatgaagatac 848

                                                                       
Query: 228 tgtaaatttcatggcctggctgacatagggcgtttccagccagccagagacacgcaagac 287
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 847 tgtaaatttcatggcctggctgacatagggcatttccagccagccagagacacccaagac 788

                                                                       
Query: 288 cctgtctcaaagagacaaaacaatgaataaacccatcatagatggcaacagttcagggaa 347
           | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 cttgtctcaaggagacaaaacaatgaataaacccatcatagatggcaacagttcagggaa 728

                                                                       
Query: 348 atgtcccctccaagccatttcaaaggacatcaggatctgaaattaggccatctactgtgc 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 atgtcccctccaagccatttcaaaggacatcaggatctgaaattaggccatctactgtgc 668

                                                                       
Query: 408 tagctctggaatgcctcactccctcttctggggctggagactgagttagagctttggaca 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tagctctggaatgcctcactccctcttctggggctggagactgagttagagctttggaca 608

                                                                       
Query: 468 tgctaggctctacatgcagctcaacatgacagccacttgctagtgcgtgcaggatctcag 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tgctaggctctacatgcagctcaacatgacagccacttgctagtgcgtgcaggatctcag 548

                                                   
Query: 528 catgctctcctgatccttaagtcgcactcccctttctgat 567
           |||||||||||||||||||||||| |||||||||||||||
Sbjct: 547 catgctctcctgatccttaagtcgaactcccctttctgat 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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