BAC Information

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BAC

Clone NameMSMg01-378D21
Chromosome7 (Build37)
Map Location 31,243,944 - 31,433,452
singlet/doubletdoublet
Overlap geneNphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik
Upstream geneSipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2
Downstream gene2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378D21.T7 (MSMg01no378_d21.b1)MSMg01-378D21.TJ (MSMg01no378_d21.g1)
ACCAG483135AG483136
length859779
length of high quality
(start - end)		124 (70 - 193)441 (78 - 518)
definitionCHROMAT_FILE: MSMg01no378_d21.b1 PHD_FILE: MSMg01no378_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:41 2005CHROMAT_FILE: MSMg01no378_d21.g1 PHD_FILE: MSMg01no378_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,243,944 - 31,244,067)(31,433,012 - 31,433,452)
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATCTGTGCTTCAGGTTGGGAGGGCAGGCCAGTCAACATATGCT
TCTAAAATTCAAGGACCAGACACAGAGGGGGCAGCAAGAGTGACAGAAAA
TGAGAAGGGGGTAGGAATGGAGGAGGAGGAGGAGGGGGGAGATTNNTNTT
TTTTNTTNNNTTTTTTTTTTCTTTTTTTTTTTTCTTTNTTTTTTTTTTTT
TTCTTTTTTTTNCTTTTNTCTTTTTTNTCTCTTTTTTTTTTCTCTTCCCT
CCTCNTTCCCTNTCTTTTTTTTTTTTTTTCCCNCCCCNCNNNNNNCCCCN
NCTCTCCTTTTTTCTCCCTCTCTTCCTTTTTTCTTTTTTCCTCTTTTTTT
TTTTTTTTTTTTTTCCCCCCCTTCTTTTTTCCTTTTTTCCCTTTTTTTTC
TTCTCTTTCTCTTTTTCTCTCTTTTTCTTTTCCCTTTTTCTTTTTCCTCT
CTCCCTCTTTTTCTTTTTTTTTCCTTTTCCTTCTCTTCTCTCTCCTCCCT
TTTTTTCTTTTTTTTTTTCCTCCCCTTCTCTTTCTTTTTTTTTCTCCTCT
CCCCCTTCTCCTTTTTCTTTCCTTTTTTTTTTCCCTCTTCTCTCTTTTTT
CTTTCTTTTTCCCCCCTTCTTTCTTTTCTCCCTTTCTCTTTCTTCTTTTT
CTCCTCCCTCCCCTCCCTCTCTTTTCTTTCTTCCCTCCTTTTTTTTTTCN
CTTCTTCCTTTTTTCTTCTTTCCTTTTTCCTCTTTTTTCNCCTTTTTTTT
CTTCTCTTCCCTTTTCCTCTCCTCTTTTTCTTTCCCTCTCTTCTTTTTTC
TTCCCTCTN

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGGTGGGTGGTAATGGTCCAA
CTTATAGGTTAAGCATGTAGCTTTGGCTGTCTGGATAATATACTAGAGAG
GGCAAGGGTGAGTTCAAGGAGATAGAGAAAGAGGCTAATAATCTAGGTAA
GGTAGAGGTAGACAACAGGGAGAACAGGTCGAACATTAGTTAAGATAGTG
TGGGGTCTGCAGCCTCACTCTGAACATACCTGCTCTCAGAAATCACAGGG
CCCTGGTTAGTCCTTGGATGGGAGATAGTGCTGTAGGGAACTGAGTCAGA
AAAGTTGATCCTGGGAGATATTAATAATAAAAGCTTAAGCTATTAAGTGG
TGGTGGCACATGCCTTTAATCCCAGCACTTGGAAGTCAGAGGCAGATCTT
TGTGAGTCTGAGGTCAGCCTGATCTACAGATGGAGTCACAGGACAGCCAG
GGTTACACAGAGAAACCCTGTCTTGAAAACAAACATAAACCACCAAAATA
GCTTTATTTAGTATGGCGACAGACGCCCCCGTGAAGAGACCTTGTTACAA
ACTCTGACTGGTCCCAGAACCCTAATATTAAGGGTAAACGTAATTAACCT
GCCCGGGGAAGCCGCTTCTCTTAGCTCAACTTCCTCCCCCTATGTCCTAT
AAAATCTGGTGGGCCACGGCGTTTGTTGCAACCCAAATGGTTCTTCCCTT
GGGGGGGGGGCTCCTTTTTGGGGCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_d21.b1 MSMg01no378_d21.b1 CHROMAT_FILE:
MSMg01no378_d21.b1 PHD_FILE: MSMg01no378_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:41 2005
         (124 letters)



>mm_chr7_31243744_31244267
          Length = 524

 Score =  240 bits (124), Expect = 2e-68
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggttgggagggcaggccagtcaacatatgcttctaaaattcaaggaccagacacagaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggttgggagggcaggccagtcaacatatgcttctaaaattcaaggaccagacacagaggg 260

                                                                       
Query: 61  ggcagcaagagtgacagaaaatgagaagggggtaggaatggaggaggaggaggagggggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcagcaagagtgacagaaaatgagaagggggtaggaatggaggaggaggaggagggggg 320

               
Query: 121 agat 124
           ||||
Sbjct: 321 agat 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no378_d21.g1 MSMg01no378_d21.g1 CHROMAT_FILE:
MSMg01no378_d21.g1 PHD_FILE: MSMg01no378_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:41 2005
         (441 letters)



>mm_chr7_31432850_31433690
          Length = 841

 Score =  830 bits (429), Expect = 0.0
 Identities = 438/441 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaggtgggtggtaatggtccaacttataggttaagcatgtagctttggctgtctggata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 603 taaggtgggtggtaatggtccaacttataggttaagcatgtagctttggctgtcttgata 544

                                                                       
Query: 61  atatactagagagggcaagggtgagttcaaggagatagagaaagaggctaataatctagg 120
           ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 543 atatactagagagagcaagggtgagttcaaggagatggagaaagaggctaataatctagg 484

                                                                       
Query: 121 taaggtagaggtagacaacagggagaacaggtcgaacattagttaagatagtgtggggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 taaggtagaggtagacaacagggagaacaggtcgaacattagttaagatagtgtggggtc 424

                                                                       
Query: 181 tgcagcctcactctgaacatacctgctctcagaaatcacagggccctggttagtccttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgcagcctcactctgaacatacctgctctcagaaatcacagggccctggttagtccttgg 364

                                                                       
Query: 241 atgggagatagtgctgtagggaactgagtcagaaaagttgatcctgggagatattaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 atgggagatagtgctgtagggaactgagtcagaaaagttgatcctgggagatattaataa 304

                                                                       
Query: 301 taaaagcttaagctattaagtggtggtggcacatgcctttaatcccagcacttggaagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 taaaagcttaagctattaagtggtggtggcacatgcctttaatcccagcacttggaagtc 244

                                                                       
Query: 361 agaggcagatctttgtgagtctgaggtcagcctgatctacagatggagtcacaggacagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agaggcagatctttgtgagtctgaggtcagcctgatctacagatggagtcacaggacagc 184

                                
Query: 421 cagggttacacagagaaaccc 441
           |||||||||||||||||||||
Sbjct: 183 cagggttacacagagaaaccc 163


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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