BAC Information

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BAC

Clone NameMSMg01-378P24
Chromosome7 (Build37)
Map Location 117,721,183 - 117,721,604
singlet/doubletsinglet
Overlap geneSbf2
Upstream geneSt5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, LOC668246
Downstream geneAdm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658, LOC384658, Galntl4
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378P24.T7 (MSMg01no378_p24.b1)MSMg01-378P24.TJ (MSMg01no378_p24.g1)
ACCAG483716AG483717
length805773
length of high quality
(start - end)		480 (50 - 529)524 (78 - 601)
definitionCHROMAT_FILE: MSMg01no378_p24.b1 PHD_FILE: MSMg01no378_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:38 2005CHROMAT_FILE: MSMg01no378_p24.g1 PHD_FILE: MSMg01no378_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGTCTTTATCCTAAAACTATCTTTTATATCATATAAGTCTT
GTAACTATCAAGTTCAGAGTTAGGCTGAAGTTACTCAACTATAATATAGA
ATGAGCTCAGAAATTTGCCAGACTTTTTAGATTTATAAGGTGGGTCACCT
TATAAATAAAAAAAGAGTGAGATTTCAAGAATTGGATTGCTAGGAATTTG
GAATATTTGGAAGACTTTAGGTTTCTTTTGAGACAGTGTCTTATAGTAGC
CAAAGCTATCCTCAGGCTCACTATATAAATCAATGTTGGGCTTGAATTCT
TGACACTCCCTACTTCCTGCCTCCACCTTCCAAGTGCTAAGGTTATAGGT
GAATACTACACCTGGCTAACTAGGTATTCTGAATCTGTAATTGTTTTTAT
TACTCCTTGCCTGCTTTTCTTACTTGATTCTGTTGCTGTGGCAAATGTCA
TGGACAAAAGCTACTTATGAGAGGAAAGTCTTATTTCAGTTTACACTTCC
CAGTAATAGTTCTCACTAAGGGAAAATTTGGATGGGAACTATGAAAGATG
GCTGCTTAAAGGCTTAATTATTTGATCTGCCCTACTAGGTTTTTCCCCAA
ACCCCCCGCCTAAGAAAGGAGGCTGCCCCTAAGGGACAAGTCCTCCCCCC
CCCCCATCCTAAAAACAAAAGAGCCCCTCCCAAAACTTGGTTTAAGTGGG
CTGGAATAAAAAAAACCTCTTATTTTGAAATTCCCCCCCCCCCTGTGGGA
ACGAG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCAAGGAATACCCAATGGC
TGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCTTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATAAAAATTTCAGGTGACAGCAGATGCTGGCGAGGATGTGGGGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTACAAGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGAT
CCCACAATACCTCTCCTGGGCATATATCCAGAACTCGCACAATATGTACT
CACTGATAAGTGGATATTAGCCCAGAAACTTAGAATACCCAAGATATATA
AGATACAATTTGTGAAACACATGAAACTCAAGAAGAACGAAGACCGAAGT
GTGGACACTTTGCCCCTTCTTAGAATTGGGAACAAAACACCCATGGAAGG
AGTTACAGAGACAAAGTTTGGAGCTGAGACGAAAGAATGGACCATCTAAA
GACTGTCATATCCAGGGATCCATCCCATAAACAGTCTCCCAAAGCTGACA
CCATTTGCCACACTATCATGATTTTGCCTCGAAGGACCCTGATTTAGCCT
CTCTCTTGTTGAACTATTTTCCCCGGCTCACCCCACTACCCATTTGTTTT
GCTTTTCCAAAGCTTATGTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_p24.b1 MSMg01no378_p24.b1 CHROMAT_FILE:
MSMg01no378_p24.b1 PHD_FILE: MSMg01no378_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:38 2005
         (480 letters)



>mm_chr7_117721183_117722062
          Length = 880

 Score =  801 bits (414), Expect = 0.0
 Identities = 420/422 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtctttatcctaaaactatcttttatatcatataagtcttgtaactatcaag 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ggaattctgtctttagcctaaaactatcttttatatcatataagtcttgtaactatcaag 363

                                                                       
Query: 64  ttcagagttaggctgaagttactcaactataatatagaatgagctcagaaatttgccaga 123
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttcagagttagactgaagttactcaactataatatagaatgagctcagaaatttgccaga 303

                                                                       
Query: 124 ctttttagatttataaggtgggtcaccttataaataaaaaaagagtgagatttcaagaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctttttagatttataaggtgggtcaccttataaataaaaaaagagtgagatttcaagaat 243

                                                                       
Query: 184 tggattgctaggaatttggaatatttggaagactttaggtttcttttgagacagtgtctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tggattgctaggaatttggaatatttggaagactttaggtttcttttgagacagtgtctt 183

                                                                       
Query: 244 atagtagccaaagctatcctcaggctcactatataaatcaatgttgggcttgaattcttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 atagtagccaaagctatcctcaggctcactatataaatcaatgttgggcttgaattcttg 123

                                                                       
Query: 304 acactccctacttcctgcctccaccttccaagtgctaaggttataggtgaatactacacc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 acactccctacttcctgcctccaccttccaagtgctaaggttataggtgaatactacacc 63

                                                                       
Query: 364 tggctaactaggtattctgaatctgtaattgtttttattactccttgcctgcttttctta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  tggctaactaggtattctgaatctgtaattgtttttattactccttgcctgcttttctta 3

             
Query: 424 ct 425
           ||
Sbjct: 2   ct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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