BAC Information

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BAC

Clone NameMSMg01-380N07
Chromosome7 (Build37)
Map Location 105,841,275 - 106,010,085
singlet/doubletdoublet
Overlap geneLOC100040769, Prkrir, Wnt11, LOC666978
Upstream geneLOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik
Downstream geneUvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380N07.T7 (MSMg01no380_n07.b1)MSMg01-380N07.TJ (MSMg01no380_n07.g1)
ACCAG485114AG485115
length796779
length of high quality
(start - end)		330 (61 - 390)458 (63 - 520)
definitionCHROMAT_FILE: MSMg01no380_n07.b1 PHD_FILE: MSMg01no380_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:00 2005CHROMAT_FILE: MSMg01no380_n07.g1 PHD_FILE: MSMg01no380_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,841,275 - 105,841,604)(106,009,628 - 106,010,085)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGT
GAGTATCTATTAGAAGGCCTCCAATCTCCTCCCGGAAGGCAGAGAAGTGT
GACATGATGGGGACCCCAGGGAGGAGACCAGGAGGACTTGATGCTAGAAA
ATGTTAATCTAGAACGTATCATCCGTCGCCTCCATCCTGTCCCCTGACTC
ATACTCTGCTCTCCACTCCGCCCTGTCTGGAGGCCCTAAGACATGGAACT
CGTCATTTCCTGCCGGGGTAAATCACAGACTGACGTGTGATACTCGTTCT
TAGTTTTTACCATACCCCAGGTATAGATGCTCACATCCATCAGGGTGGAG
GGAGGCCTTTCCACAGGGTGGCGCTGGGAGGGGTGGGGTGGTGCTCATCT
CCCTCCTCCTCTTTTTCCTTTTTCTTTCTTTCCCCCCTTTTTCCTTTTTT
TCCCCATTCCCTTTTCTCCTTTTCTCTATATTCCCCCCCCCTTTACCCTT
TTTCCCCCTTTCCCTTCATCTCTTCCCCCCCTTTTCTTCCCTCCCCCTTC
CCTTTTTTTTTCCCTTCTTTTTCCCTCCCCCCTCCTCCCTTATCCCTCTT
CCCCTTTTTCTTCTCTCTCTACCCCTTTTTTCCTTCTTACCCCCCATTAT
TCCCCCCGTTTTTTTTTCTTTTTTCATTTCCCCCTCTATTTCCATTTCCT
TTCCCTCACTCTTTCTTTACCTTATTCTGCCCTCCTTTCTCCCTTATTCT
CTTCTTTCCCCCTTCCTCTCGTCCTTTTTTACGTTCTCTTTTTTTT

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTGCCCCAGGGCGTCACTCCTGCTCTGACCAGAGCAGC
GGCTCAGCAAGTGCACAGAGAGGAGCTTTGGGCCCCTCAGAAACCTTCAC
ACTTCTTCACACAGCCCAGGGCTTGCCCACGCCTCTGGGTAGCACTGAGC
CTTCCTGGCCTTCATCTGGTAGCCAGGACCCTCCCACCTGGGGAGGACAC
TGTCTCCCTTTCTCCTGAGTCCCCCACCCAGCTCAGGGAAAACATGCCTC
CCTTGATATTCTGGGCTGTGCATTTGGAGCCCAGGGTTGGGCAGCCAGTG
TCCAGAGCCAAGAACCACAAGCTCATGAAGTGCAGGGGCCTGGGAACGGC
TCACCCGTGGAGGTGATCTTGTATGTCTCTGCCCCCCTTGTTGAGTGTCA
GAGTGATTTATGGGCAGATGCTGAGAGAAGAGGCTAAAGAAAATACCACA
GTCTTAGGGAATCTCCCCTCCTCCTGGGTGCCAACTTGCCACAGGCCCAG
GGAATAGGGAGAGGCCCTCCACTGGGTAACCTTGGCCCAGCCCCCTTCCC
TCTTTGGGCTTTCTGATGCCTTTTGAAGGGAGTCCAACAATGGCTTGGAG
AATGCCCTACTAAAGGGAAGGCCTTGTCCCCCTATTTCAAACTCTTTTCT
GGTGTGGGACACCCTCGCTGTTAGCTTCCAAATCTGCCCATTTGTTAATT
TTTTTTTTCCACTACCCTTCTCCATACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_n07.b1 MSMg01no380_n07.b1 CHROMAT_FILE:
MSMg01no380_n07.b1 PHD_FILE: MSMg01no380_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:00 2005
         (330 letters)



>mm_chr7_105841075_105841804
          Length = 730

 Score =  638 bits (330), Expect = 0.0
 Identities = 330/330 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaaggcctccaatctcctcccggaaggcagagaagtgtgacatgatggggaccccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaaggcctccaatctcctcccggaaggcagagaagtgtgacatgatggggaccccagg 260

                                                                       
Query: 61  gaggagaccaggaggacttgatgctagaaaatgttaatctagaacgtatcatccgtcgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggagaccaggaggacttgatgctagaaaatgttaatctagaacgtatcatccgtcgcc 320

                                                                       
Query: 121 tccatcctgtcccctgactcatactctgctctccactccgccctgtctggaggccctaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccatcctgtcccctgactcatactctgctctccactccgccctgtctggaggccctaag 380

                                                                       
Query: 181 acatggaactcgtcatttcctgccggggtaaatcacagactgacgtgtgatactcgttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatggaactcgtcatttcctgccggggtaaatcacagactgacgtgtgatactcgttct 440

                                                                       
Query: 241 tagtttttaccataccccaggtatagatgctcacatccatcagggtggagggaggccttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagtttttaccataccccaggtatagatgctcacatccatcagggtggagggaggccttt 500

                                         
Query: 301 ccacagggtggcgctgggaggggtggggtg 330
           ||||||||||||||||||||||||||||||
Sbjct: 501 ccacagggtggcgctgggaggggtggggtg 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no380_n07.g1 MSMg01no380_n07.g1 CHROMAT_FILE:
MSMg01no380_n07.g1 PHD_FILE: MSMg01no380_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:01 2005
         (458 letters)



>mm_chr7_106009428_106010285
          Length = 858

 Score =  870 bits (450), Expect = 0.0
 Identities = 456/458 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgccccagggcgtcactcctgctctgaccagagcagcggctcagcaagtgcacagagag 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 658 ctgccccagggcgtcactcctgctctaaccagagcagcggctcagcaagtgcacagagag 599

                                                                       
Query: 61  gagctttgggcccctcagaaaccttcacacttcttcacacagcccagggcttgcccacgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gagctttgggcccctcagaaaccttcacacttcttcacacagcccagggcttgcccacgc 539

                                                                       
Query: 121 ctctgggtagcactgagccttcctggccttcatctggtagccaggaccctcccacctggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ctctgggtagcactgagccttcctggccttcatctggtagccaggaccctcccacctggg 479

                                                                       
Query: 181 gaggacactgtctccctttctcctgagtcccccacccagctcagggaaaacatgcctccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaggacactgtctccctttctcctgagtcccccacccagctcagggaaaacatgcctccc 419

                                                                       
Query: 241 ttgatattctgggctgtgcatttggagcccagggttgggcagccagtgtccagagccaag 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttgatattctgggctgttcatttggagcccagggttgggcagccagtgtccagagccaag 359

                                                                       
Query: 301 aaccacaagctcatgaagtgcaggggcctgggaacggctcacccgtggaggtgatcttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aaccacaagctcatgaagtgcaggggcctgggaacggctcacccgtggaggtgatcttgt 299

                                                                       
Query: 361 atgtctctgccccccttgttgagtgtcagagtgatttatgggcagatgctgagagaagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atgtctctgccccccttgttgagtgtcagagtgatttatgggcagatgctgagagaagag 239

                                                 
Query: 421 gctaaagaaaataccacagtcttagggaatctcccctc 458
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gctaaagaaaataccacagtcttagggaatctcccctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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