BAC Information

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BAC

Clone NameMSMg01-381A04
Chromosome7 (Build37)
Map Location 136,641,095 - 136,641,482
singlet/doubletsinglet
Overlap genenone
Upstream geneBag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a
Downstream geneBrwd2, LOC100043150, Fgfr2, LOC546005, Ate1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381A04.T7 (MSMg01no381_a04.b1)MSMg01-381A04.TJ (MSMg01no381_a04.g1)
ACCAG485252AG485253
length740767
length of high quality
(start - end)		395 (36 - 430)220 (77 - 296)
definitionCHROMAT_FILE: MSMg01no381_a04.b1 PHD_FILE: MSMg01no381_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:16 2005CHROMAT_FILE: MSMg01no381_a04.g1 PHD_FILE: MSMg01no381_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTGT
GTCTCTGGCTGGAAAAATTCAGTCAATCACGAAAGTTGGAGCTGGTAGAA
TTAAAATGAATGATCAAAGATTCACTAAAGGCATTTCTGCTGAAGCCCAG
GAAGTTTCTGACTTCCCCCCGGTCACATGACCCCTGTTGTAATTGGCAGA
TGTGGGAAGAGAGACAAGGGCACCTGTTTGTCGGCCCTATGCTCTCTCCA
CTCAACATCCCAGTACCCCTGCCCAGGAAGCCTGTCAAGTCAGAACCAAT
AATAGTTCTTTCCAAGGTCCACGCAGAGAACGATAGAGGCACCCCCACGG
ACTTGAAGACAGGCAGAGGTGGACCCCACTCCAATTTCCCTTTATCTAAG
GGAGGGTGTGGTGTGGTGTGGTGTGGTGTNNTNTTNNNNNNNNNTNNTNT
TTNNNTTTTTTTTTTTNNNNTTTTTTTTTTTTTTNTTTTTTTTTTTNNTT
TTTTNNTNNTTTTTTTTTTTTTTNNTTTTNNTTTTTTTTTTTTTTTTTNN
TNTTTTTTTNTTNNNTTTTTTNNNNTTNNTTTTTTTTTTTTTTTTTTNNN
NTTTNNTTNTTTTTTTTTTTNNTTTTTTTTTTTNTTTTTTTTTTTTTNNN
TTTTTTTTNTTTTTTTNTTTTNNNTTTTTTTTTTTTTTTCTNNTTTTTTT
TTTNNTTTTTTTTNTNTTTNNTTTTTNNNTTTTCTTTTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCACTTCATTGAGTTTTTTTTT
TTTGCGGGGGGAGGGGGTGTTTTGCTCATATTTCTATTCTTGCCAGTGCT
AACACACACACACACACACATATATACATATATATATGTATATTTATACA
CATATGTGTATGTATGTATATATACACATATGTGTATGTATGTATATATG
TGTGTGTATATATATATATATATATATATACTTAATTCCATCTTCCAAAG
TGGACAGTGCACTGAATATGCATTTGATAGCCCATTTTCTCAACTAATAT
TTACTTCTCCCTTCCTCCTCTCCCCATTCTTCTTTTGAGATAGGCCCTCA
TTGATTTCCAGTACTGCTTTAAATTCCCTCTATGCACACGAATATGACCT
TGAACCTCTGATCTTTCTGTCTCCTGTAATCATTGCATGATAATTGTCAT
TATTGACTCGCCCTTTCCTGTCACGTCTATTTTTCCTTACTTTCTCTTTG
CCTGTCATACTTTACCCTCTTTTTCTTCTTTCCCCTTTACTACTTCCTTT
TTTTTTTTTACATTCCCAACCTTCCCCCCACCCTTTTTCTCTTATTCCAT
ACTGTAACCCTAACATACCTTCATCTCCCGATCTTTATCCCATTTTTTAT
ATTATCTTCCACTACACACTCTTTCCTTTTTTTCTCGCCCTATCCCCCAT
TCTTTCTATATTTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_a04.b1 MSMg01no381_a04.b1 CHROMAT_FILE:
MSMg01no381_a04.b1 PHD_FILE: MSMg01no381_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:16 2005
         (395 letters)



>mm_chr7_136640697_136641491
          Length = 795

 Score =  704 bits (364), Expect = 0.0
 Identities = 382/388 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgtgtctctggctggaaaaattcagtcaatcacgaaagttggagctggtaga 64
           ||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 786 gaattcagtgtgtcagtggctggaaaaattcagtcaatcacgaaagttggagcttgtaga 727

                                                                       
Query: 65  attaaaatgaatgatcaaagattcactaaaggcatttctgctgaagcccaggaagtttct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 attaaaatgaatgatcaaagattcactaaaggcatttctgctgaagcccaggaagtttct 667

                                                                       
Query: 125 gacttccccccggtcacatgacccctgttgtaattggcagatgtgggaagagagacaagg 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 666 gacttccccccggtcacatgacccctgttgtaattggcagatgtgagaagagagacaagg 607

                                                                       
Query: 185 gcacctgtttgtcggccctatgctctctccactcaacatcccagtacccctgcccaggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gcacctgtttgtcggccctatgctctctccactcaacatcccagtacccctgcccaggaa 547

                                                                       
Query: 245 gcctgtcaagtcagaaccaataatagttctttccaaggtccacgcagagaacgatagagg 304
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 546 gcctgtcaagtcagaaccaataatagttctttccaaggtccacgtagagaacgatagagg 487

                                                                       
Query: 305 cacccccacggacttgaagacaggcagaggtggaccccactccaatttccctttatctaa 364
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 486 cacccccacggacttgaagacaggcagaggtggactccactccaatttccctttatctaa 427

                                       
Query: 365 gggagggtgtggtgtggtgtggtgtggt 392
           ||||||||||||||||||||||||||||
Sbjct: 426 gggagggtgtggtgtggtgtggtgtggt 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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