BAC Information

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BAC

Clone NameMSMg01-381C24
Chromosome7 (Build37)
Map Location 139,939,466 - 139,939,961
singlet/doubletsinglet
Overlap geneA930008G19Rik
Upstream geneGpr26, Cpxm2, 4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik
Downstream gene2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2, LOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381C24.T7 (MSMg01no381_c24.b1)MSMg01-381C24.TJ (MSMg01no381_c24.g1)
ACCAG485387AG485388
length7441,242
length of high quality
(start - end)		501 (34 - 534)---
definitionCHROMAT_FILE: MSMg01no381_c24.b1 PHD_FILE: MSMg01no381_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:30 2005CHROMAT_FILE: MSMg01no381_c24.g1 PHD_FILE: MSMg01no381_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGATCCGCGGAATTCAAGGAA
CATCCTTTCTGAATGGACTCCTAGAGCTGCCCCACACCAGCCAATCAAAT
GCAGGCTTGTCCAGAGGCTTAGTTCCCTTCCTGGAATCCTGTGACATGGC
TTGGGGCTCTACCTGCTCTTCGGAGCCATGACCCATTCTTTCAACACCAC
ATTTCTTGGGGCTCCAAAAATGATCCCATCATGTTCAAGAATATTTGCCT
GGTCTTGCCAGGCTCCTCTAACGTACTGAGTGCTCAATATCCCTGGAGGA
CTGATCTAACACTGCCCCAAAAAAGGCTGAGATCTAGCGAGATGGCTCAG
TGGGGGAAAGGCATCTGGTGCCTAACCTGGGGAGGAAAGAAGTGATGCCC
ACAGCACCTGACTTTAGCAGAAGACCGTCAGGCAAATGAGGGCTGGAGGG
AGAGAGCTGGCCTCTCTTAACTGTTTCCTCTGCTGGTACAGTCACCCAAA
CACATGTGACCCCTACCAGGGCAGTCTGCTCCTTTCTCAGCAGCTGCTTC
AGCATGCTACTCTTTCAGAGTACTCATCTCCCTCCCCTCTCCAGGCCTGG
NCAGCTGTGGAAACTTCAAAAAGCTGGCTGCTAAACCTCCGGAAAGGCCT
GTAAGGAAGCACCTCCCGCAGTTGGCTTCCTGAAAAATTGGTCCTCCTAA
ACCCAGTAACCCAAACTTTCGGGAAAACCTGGAACCCCCGGAAG

TCACAGCATAACCGGTTCGACCTTTTTACCTCCCTACACCATAAAGTGAC
TTCATTATAACAGAAACAACAGACACCTTCTCTTTCTTATTCCCATAGTA
ACTGTAGTATGCCAATGGGACTTATCTTGAGATGATGTATGTTGGAATGA
CCGCCACCACCTGTTCGTATCGTTGCGCATCCCGTTCTTATGTGGCCATC
CATTAAGCACCCACCTTATTTAATACTCATGCTGTCCCCTCTTCTCACCA
AAACATAATAACACTTTATATTCTTATGCCGAGAACCGCGTACTGAAACA
TGACACCGCCAGTTTGAGGCACTTTGATCACATAATCTTTTAAACGTTGC
TCGACTCAGACTATGGTAAAAATACCACGACATGTGAGTAAAATTATGTA
GGGGGAAAGAAGAAAAAAATGCAGATAAGGAAGTATAAGGGACTCTTACA
TAAGCAACTTAGGATTTCATAATTGCGGCGAGTTAGTAGGTTATACGTCC
AGACATCTCAGAGTCAGTATAAAAACGATCTTTATACCAAGTGACGAGAG
CATCATATAGCAGGAATTCCCTGTATATATCGCGGGATTTTAGTACACGA
CCGGGTTGACTCGTGCACGCTCATGACGGGTGTAATTATATGAGTCGATA
TTATCATACCACATTTGGCGACGCAATACTTGATTATCTCTGTAACGTGA
TACCAAGCGGCGGTGACGCCTCGTTTTGGAGTCTATACTATCCTGTATTT
ATTTGACACCATACGACAGGAACGGAAAACATATACATTGTACACGCTCT
ACACACATAAATTATGATTATTCATAGACGCGTGCATCATATCACTAGTA
TAATCTCTGGCAGCGGAGCCGAGTCATCTAGTAGCGCGTATCCGGCAAAT
ATTCCTCTATTATAAATAACGCACCCTCTATACGCGTATCCGCNATATGC
ATCTTCTATGCGAAATACTGATATGAGGTATATTCGATACGAGTACGCGT
GTGACATACGGATAGTCATCACAATATAATTAACTGGTAGTCTGGCATGA
AACAACAGATGTCAGAAACGANGAAGAGTAATATAGATATTGATTCTTAC
GNCGCTCTCAGCAATATGGCGCACGGATATATATACGAAGCCGATGTATA
ATAGACAAATAGGGACGACGCAGTCGCACAGTTATTCCGATATAGCCGAC
TCACCGACCGCGCGGGTTAGTCTTAGCACGATTCATCTCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_c24.b1 MSMg01no381_c24.b1 CHROMAT_FILE:
MSMg01no381_c24.b1 PHD_FILE: MSMg01no381_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:30 2005
         (501 letters)



>mm_chr7_139939261_139940161
          Length = 901

 Score =  936 bits (484), Expect = 0.0
 Identities = 493/496 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcaaggaacatcctttctgaatggactcctagagctgccccacaccagccaatcaa 65
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaaggaacaccctttctgaatggactcctagagctgccccacaccagccaatcaa 265

                                                                       
Query: 66  atgcaggcttgtccagaggcttagttcccttcctggaatcctgtgacatggcttggggct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atgcaggcttgtccagaggcttagttcccttcctggaatcctgtgacatggcttggggct 325

                                                                       
Query: 126 ctacctgctcttcggagccatgacccattctttcaacaccacatttcttggggctccaaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctacctgctcttcggagccatgacccattctttcaacaccacatttcttggggctccaaa 385

                                                                       
Query: 186 aatgatcccatcatgttcaagaatatttgcctggtcttgccaggctcctctaacgtactg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aatgatcccatcatgttcaagaatatttgcctggtcttgccaggctcctctaacgtactg 445

                                                                       
Query: 246 agtgctcaatatccctggaggactgatctaacactgccccaaaaaaggctgagatctagc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agtgctcaatatccctggaggactgatctaacactgccccaaaaaaggctgagatctagc 505

                                                                       
Query: 306 gagatggctcagtgggggaaaggcatctggtgcctaacctggggaggaaagaagtgatgc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gagatggctcagtgggggaaaggcatctggtgcctaacctggggaggaaagaagtgatgc 565

                                                                       
Query: 366 ccacagcacctgactttagcagaagaccgtcaggcaaatgagggctggagggagagagct 425
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 566 ccacagcacctgactttagcagaagaccgtcaggcaaatgagggctagagggagagagct 625

                                                                       
Query: 426 ggcctctcttaactgtttcctctgctggtacagtcacccaaacacatgtgacccctacca 485
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 626 ggcctctcttaactgtttcctctactggtacagtcacccaaacacatgtgacccctacca 685

                           
Query: 486 gggcagtctgctcctt 501
           ||||||||||||||||
Sbjct: 686 gggcagtctgctcctt 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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