BAC Information

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BAC

Clone NameMSMg01-381O23
Chromosome7 (Build37)
Map Location 139,051,745 - 139,245,224
singlet/doubletdoublet
Overlap geneGpr26, Cpxm2
Upstream genePlekha1, Htra1, Dmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679
Downstream gene4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381O23.T7 (MSMg01no381_o23.b1)MSMg01-381O23.TJ (MSMg01no381_o23.g1)
ACCAG485957AG485958
length756775
length of high quality
(start - end)		463 (61 - 523)431 (72 - 502)
definitionCHROMAT_FILE: MSMg01no381_o23.b1 PHD_FILE: MSMg01no381_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:30 2005CHROMAT_FILE: MSMg01no381_o23.g1 PHD_FILE: MSMg01no381_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,051,745 - 139,052,207)(139,244,794 - 139,245,224)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGAAG
AGTTCAGAAAATGCCATAACCTTGGAGAGTGGGGTAGACTAGAAGGAACA
TAAAGGAATTGGGTTTGACAGGCTCTCTGGAATCCAGGTCTGAGTGTATG
TACCTCTATTACTTTGGACAGATTTTTGAAATCTTAACTTCTCTAGGGAT
TTTCCTCTCACTGAAAAATATGTTAAAGGTGCCCTTCCAGACCATATAAG
GACTGATGTCTAGAATGGCTCAAATGCTTAGCAAGCTAGAGAATCAAGGA
ATGACATTCAAGAAAACCACAGTCTGGCATCTTAGATGGGGTCTCCAGGA
AGCAGAGTCCCTGAAAGAATTTACCACAGATGCTGGGGGGAGGGAAAGTA
GGGGCACCAGATGAGTTCTCAGGTAGGGCTGGGCTAAATGAGAAGCTGGG
CTGGGGTGTTCTCTAAAGATAGGTGGCCTTCAGCGTTGTTCTCAATTGAG
GTAAGTGGTCTGGATCTTGTGTCACCTCATCAGTTCTGGCTTGGAGAGGA
CTCTGTATCAGCAAGTCCCCCTTGGCAGAGGGGATGCCCTTCTTCTGAAG
GATTTCCCCGAAAAGGGGAAATGGGGAATTGGATTCGGCTACCTCTCTAT
GGCTTGTAATAAGTCTCCCGAACAAGGGTGGATTTTCAAAGGAAAGGTTT
TTTTGGGATGGCCCTCCCCCAAGGGATACAAGTCCTTCCCCTCCCAGTTG
GGAAAN

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGCCCTATCCAGAAACTGGTAGAGCTGGA
AGTTGTTAGGTCTTGCCCTTAGCCACCTAGACACTCACATTTCACAGGAC
TGCACATGGGAGAAAGTAGCAGGGCATGTTGGTGTCAAAGTTAGGGCTCC
TTACTTAGAACCACGATAAGGGGATGTCTGAGATCGTGAGTCTGCATCCT
GGCTCAGGTGTGATGGGACTGAGTTGCTGTGTCCTGAGATCTCCCTATGA
TGAAAACAGTTACATACATTGGCTGTCCATGGGCTAGCTACCCAGTGTGA
CCAGTGCCAGATGTCAAAGCCAGTTGTGTATAGCCACCACATGGGCCTAA
AGAGGCTTTTCTAAGAGACCCACAAATCATTTGGCAGCAACCAGAGAGCC
CCATGGTTTACATACCAAGATTTGCAAAGGCTGAGAATAGCATAATGCCT
AAGGTCATCTGCAGGGGTTGAAAGTCCCAGAAAAATACAATTCCCCTCTT
TTTTTCTTGATAGGGAGAGGACTTTCCAGGCAATAATGGAATTGGAAAAA
CTTTCTGGCCAAAAGTTCAACTTTGGGCCCCTCCATAAATAAAGGAGGAC
CCCGCGAATTTTTTTCTCTGAACCCCTCACTTTTTCATTATAAAAATTGC
TTTAAAAAATGGGGGGGAAGGTTCCCTCCTCAAGGGGGAAGAACAACAAA
AAATGTATGGGGTGGCACTTTCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_o23.b1 MSMg01no381_o23.b1 CHROMAT_FILE:
MSMg01no381_o23.b1 PHD_FILE: MSMg01no381_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:30 2005
         (463 letters)



>mm_chr7_139051545_139052407
          Length = 863

 Score =  841 bits (435), Expect = 0.0
 Identities = 456/463 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgccataaccttggagagtggggtagactagaaggaacataaaggaattgggtttgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgccataaccttggagagtggggtagactagaaggaacataaaggaattgggtttgaca 260

                                                                       
Query: 61  ggctctctggaatccaggtctgagtgtatgtacctctattactttggacagatttttgaa 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctctctggaatccaggtctgagcgtatgtacctctattactttggacagatttttgaa 320

                                                                       
Query: 121 atcttaacttctctagggattttcctctcactgaaaaatatgttaaaggtgcccttccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcttaacttctctagggattttcctctcactgaaaaatatgttaaaggtgcccttccag 380

                                                                       
Query: 181 accatataaggactgatgtctagaatggctcaaatgcttagcaagctagagaatcaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accatataaggactgatgtctagaatggctcaaatgcttagcaagctagagaatcaagga 440

                                                                       
Query: 241 atgacattcaagaaaaccacagtctggcatcttagatggggtctccaggaagcagagtcc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 atgacattcaagaaaaccacagtctggcatcttagatggggtctccaggaagcagactcc 500

                                                                       
Query: 301 ctgaaagaatttaccacagatgctggggggagggaaagtaggggcaccagatgagttctc 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 501 ctgaaagaatttaccacaggtgctggggggagggaaagtaggggcaccagatgagttctt 560

                                                                       
Query: 361 aggtagggctgggctaaatgagaagctgggctggggtgttctctaaagataggtggcctt 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggtagggctgggctaaatgagaagctgggctggggtgttctctaaagataggtggcctt 620

                                                      
Query: 421 cagcgttgttctcaattgaggtaagtggtctggatcttgtgtc 463
           ||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagcactgttctcaattgaggtaagtggtctggatcttgtgtc 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no381_o23.g1 MSMg01no381_o23.g1 CHROMAT_FILE:
MSMg01no381_o23.g1 PHD_FILE: MSMg01no381_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:30 2005
         (431 letters)



>mm_chr7_139244594_139245424
          Length = 831

 Score =  787 bits (407), Expect = 0.0
 Identities = 425/431 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgccctatccagaaactggtagagctggaagttgttaggtcttgcccttagccacctaga 60
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tgccctagcaagaaactggtagagctggaagttgttaggtcttgcccttagccacctaga 572

                                                                       
Query: 61  cactcacatttcacaggactgcacatgggagaaagtagcagggcatgttggtgtcaaagt 120
           ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 571 cactcacatttcacagggctgcacatgggagaaagtagcagggcctgttggtgtcaaagt 512

                                                                       
Query: 121 tagggctccttacttagaaccacgataaggggatgtctgagatcgtgagtctgcatcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tagggctccttacttagaaccacgataaggggatgtctgagatcgtgagtctgcatcctg 452

                                                                       
Query: 181 gctcaggtgtgatgggactgagttgctgtgtcctgagatctccctatgatgaaaacagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gctcaggtgtgatgggactgagttgctgtgtcctgagatctccctatgatgaaaacagtt 392

                                                                       
Query: 241 acatacattggctgtccatgggctagctacccagtgtgaccagtgccagatgtcaaagcc 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 391 acatacattggctgtccatgggctagctacccagtgtcaccagtgccagatgtcaaagcc 332

                                                                       
Query: 301 agttgtgtatagccaccacatgggcctaaagaggcttttctaagagacccacaaatcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agttgtgtatagccaccacatgggcctaaagaggcttttctaagagacccacaaatcatt 272

                                                                       
Query: 361 tggcagcaaccagagagccccatggtttacataccaagatttgcaaaggctgagaatagc 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 271 tggcagcaaccagagagccccatggtttacataccaagatttgcaagggctgagaatagc 212

                      
Query: 421 ataatgcctaa 431
           |||||||||||
Sbjct: 211 ataatgcctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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