BAC Information

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BAC

Clone NameMSMg01-381P19
Chromosome7 (Build37)
Map Location 135,090,484 - 135,090,950
singlet/doubletsinglet
Overlap genenone
Upstream geneA830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36
Downstream geneFus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381P19.T7 (MSMg01no381_p19.b1)MSMg01-381P19.TJ (MSMg01no381_p19.g1)
ACCAG485997AG485998
length7411,250
length of high quality
(start - end)		470 (34 - 503)---
definitionCHROMAT_FILE: MSMg01no381_p19.b1 PHD_FILE: MSMg01no381_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:34 2005CHROMAT_FILE: MSMg01no381_p19.g1 PHD_FILE: MSMg01no381_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATTCCA
TCCTAACAAAGGGATCACAGATTCTGCCTTGTTGAGCAAGGCCTGGGGGT
ACTGGAGAGGACTAAGCAGCCTGGTAAAGCTGGAAACCCCTCTGTGCTGG
GGTGGTCGACTCTCAATGCTGTTCCTTGCTTGCTCTTCATGTGACTTAGA
AAAGTCACTCAGTCTCTTGGTACACTATTTATCATTAGGAGTCTATTTAA
GGAAGGTATGGCACTGGGTGTGGTAGTACCTGTGACCCCAACACTGTGAA
GTCTGAAGGCACTCCAGTCCACAGTTCCTAGACTACACAGAAGCTGGAGA
TGTGGGTTAGCTGCTATGATTGCTTGCTGCTCTTCCAGAGGACCTGAGTT
CAGTTTCCAGAATCCACAACACCAGCTCACAACCTCCGGTGACTTCAGCT
CCAGATTTGGTGCCCTCCTATGCCCTCTCTGTGGGTAACAGCACCCACAT
GGCATAAAAAGGTGTGTGTGAATGAATGTGTGCGCCACTTTTATTATTCT
TCCCCCTCTTCCCTTTTCCCCCCCCCCTTTCCTTCCCTTCCCTATTTCCC
CTAGTCCCCCCCTCCTTTCCCTTTCCTCCCTTTCTCCCCGTTTTTTCTCC
TTCTTTCTTTCTTTCTTCCCCTTTTTTTTTCCCTCCTCCCCCCCCGATTT
CACCCGTTTTTTCCTCTCCTCCGCTCTATTTTCTTTTTTTN

TATGGTGTTTGTTGAGTGTGGAATNTCACTGTGACTACTATTATAACTGA
GCGGGAACAACATTCAAATAGCGCACGCTCAAGAGAGACCCTCCACTTTA
CCCACAGCAACTCTNATATACTAGTGCTTGCGAGGAGAAGTAACGTTGCT
TGGCGCGACCGAGCAGCGTGTGATACAGCACAGACCCCGTTGAGTTACGG
CCTATTCTTGTGTCGGATCGCATCACCATACATAGCTGTGATACATACAT
TAGTGCCGGTGCATCGTCGCGATCATGGGCGAAGATGGCGAAGGAAGAAG
AGGATAGCACGTAAGTAGCAGTAAGTTTCGTCGACGGACTGATGCCGCCG
GACGCGGATGTGATTAGGAGAGTGATGAAATTATGGCACTAACACATCGC
GCACATCTCGTCGTGTTAACCACACGTATACACATATTGAGTGAACATAC
GTAAGCAATGATGTACGTGGTACTGAGTCCGTATCATACAAATAAAGCGA
TAGTCAACGATGTCGTGTACATCGATTGCAGTGCGTACATGATCAGGCTA
CTCACAACCACGTAATAGCAAACGTAATATGCTCGCCCCTACCACACGCT
AGAAGCAGTACAGTACGAAATGGGAGTGTCGCATATTCACGCGCGCGTAT
TAATCTACGTACCGTCGGCAGTCTGTATCGGGATTCACGTCGAGTCTCCG
TCTAATANATTAGCCTGTGACCGCCGTATTTTGGTGTCGTGTCACACGCG
AATATATTATAATATTTATCGAACGCGTGAGCACTTATTCATGAAACGCG
CCGATCACACATATTAATCACTTCTGGACGTATACTATATGTAAACGGCT
CACGACGATATACGATAATTTGCATGGCGGATTCTATAGTCATAACTCTT
TCTGATGGTACATCGCCGTACGCGTAAACTATCACATATTATACGCCGAA
GTATCTCATATTTACTCGCGGTATTGTATACTACGCGTCGGGAATTTAAT
ATTCGCGTTCGCGCGCGAGCACGGTGTATACAGTATATGCAGCAATACTG
TAATATACACATTTCATACATCTCACCGCTCGACGCGGAGCTATTATATT
AATATGCTGACGCATAGGAGCGACGCAAGCCACACGACGATGATATCTCG
TGGGCACATAACGCTCAGACATAACGCGTCACGTATTGTATAACGTCCNC
GGACTATTCTATACTTACGTACGCACCGCGATGCTCGCTTCAATTGCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_p19.b1 MSMg01no381_p19.b1 CHROMAT_FILE:
MSMg01no381_p19.b1 PHD_FILE: MSMg01no381_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:34 2005
         (470 letters)



>mm_chr7_135090281_135091150
          Length = 870

 Score =  888 bits (459), Expect = 0.0
 Identities = 465/467 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaattccatcctaacaaagggatcacagattctgccttgttgagcaaggcctgg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaattccatcctaacaaagggatcacagattctgccttgttgagcaaggcctgg 263

                                                                       
Query: 64  gggtactggagaggactaagcagcctggtaaagctggaaacccctctgtgctggggtggt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggtactggagaggactaagcagcctggtaaagctggaaacccctctgtgctggggtggt 323

                                                                       
Query: 124 cgactctcaatgctgttccttgcttgctcttcatgtgacttagaaaagtcactcagtctc 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 324 cgactctcaatgctgttccttgcttgctcttcatgtgacttagaaaagtcactccgtctc 383

                                                                       
Query: 184 ttggtacactatttatcattaggagtctatttaaggaaggtatggcactgggtgtggtag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttggtacactatttatcattaggagtctatttaaggaaggtatggcactgggtgtggtag 443

                                                                       
Query: 244 tacctgtgaccccaacactgtgaagtctgaaggcactccagtccacagttcctagactac 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 tacctgtgaccccaacactgtgaagtctgaaagcactccagtccacagttcctagactac 503

                                                                       
Query: 304 acagaagctggagatgtgggttagctgctatgattgcttgctgctcttccagaggacctg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acagaagctggagatgtgggttagctgctatgattgcttgctgctcttccagaggacctg 563

                                                                       
Query: 364 agttcagtttccagaatccacaacaccagctcacaacctccggtgacttcagctccagat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agttcagtttccagaatccacaacaccagctcacaacctccggtgacttcagctccagat 623

                                                          
Query: 424 ttggtgccctcctatgccctctctgtgggtaacagcacccacatggc 470
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttggtgccctcctatgccctctctgtgggtaacagcacccacatggc 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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