BAC Information

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BAC

Clone NameMSMg01-382F18
Chromosome7 (Build37)
Map Location 37,440,186 - 37,587,311
singlet/doubletdoublet
Overlap geneTshz3
Upstream geneDpy19l3, zfp507, LOC100043872, EG668988, LOC668507
Downstream geneLOC100043874, Zfp536, LOC100043453
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382F18.T7 (MSMg01no382_f18.b1)MSMg01-382F18.TJ (MSMg01no382_f18.g1)
ACCAG486281AG486282
length783762
length of high quality
(start - end)		419 (33 - 451)196 (61 - 256)
definitionCHROMAT_FILE: MSMg01no382_f18.b1 PHD_FILE: MSMg01no382_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:05 2005CHROMAT_FILE: MSMg01no382_f18.g1 PHD_FILE: MSMg01no382_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,586,896 - 37,587,311)(37,440,186 - 37,440,380)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAACAAG
ATTTCGCAGACAGAGGAGCCGACCTGGTCAGATGCAGCTGAGGACCAAAT
AAGCAACATTCAAGAATTTGGGTCCAAAGTCTAGCCAAGGTTAAGGTGGT
AGAAAGATTACCCAAAGCCTCAGTTTCCAAAGTAGGACTGCCAGCCCTAG
ACCATGGGTCAGTGTGGTGTTGGAGTGTTGCATTATGTGGGTGGTGGCCG
GTGACCACTACTGAGCCAGGCCCTTGGGAAGCATTCAGTGAAGCTGAGCA
CTGACCAGTCTCTGCTTACTGTTCACAAGTCAGCTCCTGCACTAGGACAG
AAAGGTGACGTCTCAAACTACCGGAGAAATCTAGCAACACAAAAGTCAGC
AGCCAACGGATTGGTCATTTTTCGGCAGTAGAATGATTTTTTGAATGAGA
TAAAGCTGTCATTTTTGTTTGGAGAAATAAATTATAAAGAAAACCCAAAA
ATAACTGGTCTTCCAGCCCTTGGTTGTGTGGTAACCCGATGTCATAATTT
TGCTCTCTAGCTGTGTGATTTACCTCTTGACTTATGTTCAATTGGTTATT
TATTGGTTTTTTTTTTTTATTCTTTCTTTATCTTTCTTCTTTGTAAAGTT
TTCTTGTTTCCTTTTTCTTCCCTTCTTCTTTCTATTTTTTGCTCTCCGCT
CTTTCTTTTTTTTGCTTTCTCCGTCTCTCGTTTCCTCTTTTTTTTTTCTA
CTCTCCCTTCTCGATAGTTACCTCACTCCCCTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGAGGTTGCAGATGCATGCTACTGCCCACAGCGTTCCAGG
GTGCTGGGGATCTGAACTCAGGCTCTGACATCTTAACAGCCCACACTGCC
CATCAAGCCATGGTCTGCACACTCCATTGCTTGCTACAAGGACTTGCAGA
AACAAAGATGCACACTTGGTGGTAGTCAGGAAGGGGAAAGAGGGAGGGAG
GGTGGNAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTTTTTTTTTNCNNNNNTTNTNNNTTTTTNNTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTNTTNTTTTTTTTTTTTTTTTTTTTTNTTNTNTNN
NTTTTTTTTTTTTTNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTNTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTT
TTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTNTTTT
TTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTNTTTTTTTTTTTTNTTTTTTTTTTTNTTTTTTTTTTTTNNNTTT
TNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTNTNTTTTTTTTTNTTTT
TTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_f18.b1 MSMg01no382_f18.b1 CHROMAT_FILE:
MSMg01no382_f18.b1 PHD_FILE: MSMg01no382_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:05 2005
         (419 letters)



>mm_chr7_37586693_37587511
          Length = 819

 Score =  781 bits (404), Expect = 0.0
 Identities = 413/416 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagaacaagatttcgcagacagaggagccgacctggtcagatgcagctgaggac 63
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggaattcagaacaagatttcacagacagaggagccgacctggtcagatgcagctgaggac 560

                                                                       
Query: 64  caaataagcaacattcaagaatttgggtccaaagtctagccaaggttaaggtggtagaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 caaataagcaacattcaagaatttgggtccaaagtctagccaaggttaaggtggtagaaa 500

                                                                       
Query: 124 gattacccaaagcctcagtttccaaagtaggactgccagccctagaccatgggtcagtgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gattacccaaagcctcagtttccaaagtaggactgccagccctagaccatgggtcagtgt 440

                                                                       
Query: 184 ggtgttggagtgttgcattatgtgggtggtggccggtgaccactactgagccaggccctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggtgttggagtgttgcattatgtgggtggtggccggtgaccactactgagccaggccctt 380

                                                                       
Query: 244 gggaagcattcagtgaagctgagcactgaccagtctctgcttactgttcacaagtcagct 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 379 gggaagcattcagtgaagctgagcactgaccagtctctgcttactgttcacaagccagct 320

                                                                       
Query: 304 cctgcactaggacagaaaggtgacgtctcaaactaccggagaaatctagcaacacaaaag 363
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 319 cctgcactaggacagaaaggtgacgtctcaaactaccggagaaatcaagcaacacaaaag 260

                                                                   
Query: 364 tcagcagccaacggattggtcatttttcggcagtagaatgattttttgaatgagat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tcagcagccaacggattggtcatttttcggcagtagaatgattttttgaatgagat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_f18.g1 MSMg01no382_f18.g1 CHROMAT_FILE:
MSMg01no382_f18.g1 PHD_FILE: MSMg01no382_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:05 2005
         (196 letters)



>mm_chr7_37439986_37440581
          Length = 596

 Score =  346 bits (179), Expect = e-100
 Identities = 191/195 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaggttgcagatgcatgctactgcccacagcgttccagggtgctggggatctgaactca 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tgaggttgcagatgcatgctactgcccacagcgttacagggtgctggggatctgaactca 260

                                                                       
Query: 61  ggctctgacatcttaacagcccacactgcccatcaagccatggtctgcacactccattgc 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ggctctgacatcttaacagcccacactgcccatcaagccatgctctgcacactccattgc 320

                                                                       
Query: 121 ttgctacaaggacttgcagaaacaaagatgcacacttggtggtagtcaggaaggggaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 321 ttgctacaaggacttgcagaaacaaagatgcacacttggtggtagtcaggaaggggtcag 380

                          
Query: 181 agggagggagggtgg 195
           |||||||||||||||
Sbjct: 381 agggagggagggtgg 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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