BAC Information

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BAC

Clone NameMSMg01-382H11
Chromosome7 (Build37)
Map Location 146,555,719 - 146,556,071
singlet/doubletsinglet
Overlap genenone
Upstream geneTcerg1l, LOC100043290, Mapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2
Downstream geneInpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382H11.T7 (MSMg01no382_h11.b1)MSMg01-382H11.TJ (MSMg01no382_h11.g1)
ACCAG486363AG486364
length731743
length of high quality
(start - end)		619 (35 - 653)357 (63 - 419)
definitionCHROMAT_FILE: MSMg01no382_h11.b1 PHD_FILE: MSMg01no382_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:13 2005CHROMAT_FILE: MSMg01no382_h11.g1 PHD_FILE: MSMg01no382_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGCC
CATACCTAAACATGATAAAAGCAATCTACAACAAACCAGTAGCCAACATC
AAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAG
ACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTAT
TAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGA
AAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATAT
AAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCT
TCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTT
CTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACC
CTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACTCTAACTA
AGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAGAA
ATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGG
CAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGAT
TCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTGGAA
GGAGCAATTTGCAAATTTGTCTGGAATAACA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAGTGGACCAGACAGAACATAGGGGTAGGAGGAGCTCAA
GAGTGCCCTGGTGCCCCACACCAAGCTGCACCCTGACCTGGCAAGGTTGG
AGGAGGCATGGGCTGGTTTCCATCACTAAGCATTCGCCCATAACAATTCA
CTGGCGGGCACTAAGGAGCTTCCGCAGGCATCCGGAGGGAAGTTGACATC
CGGGTCCTGAATCAGATCACACCTTGGCCAGAATTCCATGACCATGAGAG
CAGCAGGGCCCTATCTGTGCAGAGTTACCCTCCATACAGAGCTCACAAGA
CTTACACTCTGGTCCTTGAGGAATTTCTGTAGTCCGAGAGGCTCACGGGG
TGGGNGGTGGGGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNN
NNNNNNNNNNNNNNNNNNNGNNNNNNNNNNGNNNNNNNNNNGNNNNNNNN
NNGNNNGGGNGNNNNGGGNGGGGGGGGGGGGNGGNGGGGNGGGGGGGGGG
GGNGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGN
GGGGGGGNGGGNGGGGGGGGGGGGGNGGGGNGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGNGGGTGGTTTNGGGTGGTTGTTTTTTGTTGTGNTTTTTT
TTTTTTTTTGTTTTTTTTTNGTTTGTTTTTTTTTTTGTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_h11.g1 MSMg01no382_h11.g1 CHROMAT_FILE:
MSMg01no382_h11.g1 PHD_FILE: MSMg01no382_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:13 2005
         (357 letters)



>mm_chr7_146555519_146556274
          Length = 756

 Score =  677 bits (350), Expect = 0.0
 Identities = 353/354 (99%), Gaps = 1/354 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggaccagacagaacataggggtaggaggagctcaagagtgccctggtgccccacacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggaccagacagaacataggggtaggaggagctcaagagtgccctggtgccccacacc 260

                                                                       
Query: 61  aagctgcaccctgacctggcaaggttggaggaggcatgggctggtttccatcactaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagctgcaccctgacctggcaaggttggaggaggcatgggctggtttccatcactaagca 320

                                                                       
Query: 121 ttcgcccataacaattcactggcgggcactaaggagcttccgcaggcatccggagggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcgcccataacaattcactggcgggcactaaggagcttccgcaggcatccggagggaag 380

                                                                       
Query: 181 ttgacatccgggtcctgaatcagatcacaccttggccagaattccatgaccatgagagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgacatccgggtcctgaatcagatcacaccttggccagaattccatgaccatgagagca 440

                                                                       
Query: 241 gcagggccctatctgtgcagagttaccctccatacagagctcacaagacttacactctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagggccctatctgtgcagagttaccctccatacagagctcacaagacttacactctgg 500

                                                                 
Query: 301 tccttgaggaatttctgtagtccgagaggctcacggggtgggnggtgggggggt 354
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tccttgaggaatttctgtagtccgagaggctcacggggtggg-ggtgggggggt 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 756
Length adjustment: 9
Effective length of query: 348
Effective length of database: 747
Effective search space:   259956
Effective search space used:   259956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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