Query= MSMg01no383_d20.b1 MSMg01no383_d20.b1 CHROMAT_FILE:
MSMg01no383_d20.b1 PHD_FILE: MSMg01no383_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:15 2005
(538 letters)
>mm_chr7_127095802_127096739
Length = 938
Score = 569 bits (294), Expect = e-166
Identities = 407/480 (84%), Gaps = 56/480 (11%)
Strand = Plus / Minus
Query: 63 aatttaaggctagcctgggcttacttattaagattaagatagatagatagatagatagat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 aatttaaggctagcctgggcttacttattaagattaagatagatagatagatagatagat 879
Query: 123 agatagatagatag--a--tagatagatagatagatagatagatagataggcaggcaggc 178
|||||||||||||| | || ||| ||| ||| ||| ||| ||| ||||||||||||
Sbjct: 878 agatagatagataggcaggcaggcagacagacagacagacagacagacaggcaggcaggc 819
Query: 179 aggcaggcaggcagacagacagacagacagacagacagacagacagacagacagacagac 238
|||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 818 aggcaggcaggcaggcaggcaggcagacagacagacagacaggcagacagacagacagac 759
Query: 239 agacagacagatagatagatagatagatagatagatagatagatagatagatagatagat 298
||||||||
Sbjct: 758 agacagac---------------------------------------------------- 751
Query: 299 agatagatagatagatagtcagaatcaacatggcctgaagtttagtctggacccaaccag 358
||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 agacagacagacagatagtcagaatcaacatggcctgaagtttagtctggacccaaccag 691
Query: 359 ttgctacttatagcataggcaaaggactcattgcaaagaacttgagatcatggaagaact 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ttgctacttatagcataggcaaaggactcattgcaaagaacttgagatcatggaagaact 631
Query: 419 gaaggaaagtccttcaagacccaagtccaggaaacagagtacagatgaggaagataagtt 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 630 gaaggaaagtccttcaagacccaagtccaggaaacagagtacagatgaggaagataagct 571
Query: 479 ttcctacatctccctgactagaagcttggagttcaccccttcccccaatatctaagtagg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ttcctacatctccctgactagaagcttggagttcaccccttcccccaatatctaagtagg 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 108
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_d20.g1 MSMg01no383_d20.g1 CHROMAT_FILE:
MSMg01no383_d20.g1 PHD_FILE: MSMg01no383_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:15 2005
(507 letters)
>mm_chr7_126929707_126930613
Length = 907
Score = 951 bits (492), Expect = 0.0
Identities = 504/508 (99%), Gaps = 2/508 (0%)
Strand = Plus / Plus
Query: 1 atctgggcattttcctctgcatttactgtactttggagctccttttgatatatgctgggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctgggcattttcctctgcatttactgtactttggagctccttttgatatatgctgggg 260
Query: 61 ctctggatactcatgttgcaagtagctgcttcttcaacttgatctgtacccaaatttctg 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctggatactcatgttgcaagtagctgcttcttcaacttgatctgtacccaaatttctg 320
Query: 121 gccaaaatcttgggattcttcttagtgagaacctatgattccacagacaaatccattgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaaaatcttgggattcttcttagtgagaacctatgattccacagacaaatccattgct 380
Query: 181 ttaggaaccgtatttataatttcttgtgtagacattatatatgacaagaaaaggaaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaggaaccgtatttataatttcttgtgtagacattatatatgacaagaaaaggaaaaat 440
Query: 241 gtcattggtgcataaatgactacacacatgaaatcaacattttaatgaacatgactacta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcattggtgcataaatgactacacacatgaaatcaacattttaatgaacatgactacta 500
Query: 301 cccgaggacgcaaaatgacagaataaagct-acaagacaccactaaccttgttcaaggac 359
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 501 cccgaggacgcaaaatgacagaataaag-tgacaagacaccactaaccttgttcaaggac 559
Query: 360 ctggtaattttcattaagcaaccatccctgatcattttccaagcaagaagagcagtgttc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctggtaattttcattaagcaaccatccctgatcattttccaagcaagaagagcagtgttc 619
Query: 420 cgagaatcatctaagcctgaggaaataaaagtatcaaacactgaatgccatggtactacc 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 620 cgagaatcatctaagcctgaggaaataaaagtatcaaacactgaatgccgtggtactacc 679
Query: 480 ataaagaaataatggaaaacagattatt 507
||||||||||||||||||||||||||||
Sbjct: 680 ataaagaaataatggaaaacagattatt 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
