Query= MSMg01no383_i09.b1 MSMg01no383_i09.b1 CHROMAT_FILE:
MSMg01no383_i09.b1 PHD_FILE: MSMg01no383_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:35 2005
(481 letters)
>mm_chr7_119924712_119925592
Length = 881
Score = 795 bits (411), Expect = 0.0
Identities = 462/487 (94%), Gaps = 15/487 (3%)
Strand = Plus / Minus
Query: 6 gaattccaggaaaaatg-atccacaactccaatctaactgttctctggtgagcaattcta 64
|||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gaatgccaggaaaaaagaatccacaactccaatctaactgttctctggtgagcaattcta 427
Query: 65 ggcctcaagggttccatgggctctgtggtttcctggggccatctactttatcctagtagc 124
|||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 426 ggcctcaagggttctttgggctctgtggtttcct-gggccacctactttatcctagtagc 368
Query: 125 cattgaggaagaaccttctaaaactcatatcccaaatgtaggagaatgatgtggactgtc 184
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cattgaggaagaaccttctagaactcatatcccaaatgtaggagaatgatgtggactgtc 308
Query: 185 ttaaccagccctggtcaaaaggctctgaggctgataccaactcctgcccttcactcaacc 244
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 307 ttaaccagccctggtcaaaaggctctgaggctgatactaactcctgcccttcactcaacc 248
Query: 245 accc-------------gtcacctagaactgtcacctagaactgtcacctagaaccggtg 291
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 acccgtcacctagaactgtcacctagaactgtcacctagaactgtcacctagaaccggtg 188
Query: 292 gagccaggaaaagcttgtagctcagctatctcaagcagtggaacttctcaaaggagggcc 351
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 187 gagccaggaaaagcttgtagctcagctacctcaagcagtggaacttctcaaaggagggcc 128
Query: 352 cacccacctcagaaccaaactgacaagtccttatcaggtgtttcagagctatctcagaac 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 127 cacccacctcagaaccaaactgacaagtccttatcaggtgtttcagagctatctcggaac 68
Query: 412 tgacagaatcttccatcagccgggaatccctcttccaaagtctacaacccacataacaag 471
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 67 tgacagaatcttccatcagccgggaatccctcttccaaagtctacaacccacttaacaag 8
Query: 472 aagtcca 478
|||||||
Sbjct: 7 aagtcca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_i09.g1 MSMg01no383_i09.g1 CHROMAT_FILE:
MSMg01no383_i09.g1 PHD_FILE: MSMg01no383_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:35 2005
(466 letters)
>mm_chr7_119718651_119719511
Length = 861
Score = 685 bits (354), Expect = 0.0
Identities = 431/480 (89%), Gaps = 42/480 (8%)
Strand = Plus / Plus
Query: 1 tttcttcttttcttccagggccctttccggaaggcatggtgagtgtcgtgagcttgtctg 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tttcttcttttcttccagggccctttccggaaggcatggtgagtgtcatgagcttgtcta 260
Query: 61 gcttctgtggcctcggtgaagctacttgtttctgttgtctaatgtgtctctgtcccagct 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttctgtggtctcggtgaagctacttgtttctgttgtctaatgtgtctctgtcccagct 320
Query: 121 tgggacacactggctaggtggggagggacagcttagtgacatgaagaacactcactcatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggacacactggctaggtggggagggacagcttagtgacatgaagaacactcactcatc 380
Query: 181 agcacagatctggccccagtagggcagacttaccctgtgcctggcatggaagtttaggaa 240
||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 381 agcacaggtctggccccagtagggcagacttaccctgtgcctgg--t---agtttaggaa 435
Query: 241 gagatatttgaacacacttgggagacaaccccttgcttgctccctcttagttcctattat 300
|||||||||||||||||| |||||||||||||||||||
Sbjct: 436 gagatatttgaacacact-----------------------ccctcttagttcctattat 472
Query: 301 ggaacccatctcccagaacttacacatgctcatgcatagacagacagaaagacaga-a-a 358
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
Sbjct: 473 ggaacccatctcccagaacttacacatgctcatgcatagacagacagacagacagacaga 532
Query: 359 ca--ca----------cacacacacacacacacacacacacacaccttcctagcagtctt 406
|| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cagacagacagacagacacacacacacacacacacacacacacaccttcctagcagtctt 592
Query: 407 aactttgcccattaatgcccaaatggaaaagtctggctttgggttacagtccttccccaa 466
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 agctttgcccattagtgcccaaatggaaaagtctggctttgggttacagtccttccccaa 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 861
Length adjustment: 10
Effective length of query: 456
Effective length of database: 851
Effective search space: 388056
Effective search space used: 388056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
