Query= MSMg01no384_e10.b1 MSMg01no384_e10.b1 CHROMAT_FILE:
MSMg01no384_e10.b1 PHD_FILE: MSMg01no384_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:32 2005
(522 letters)
>mm_chr7_92004288_92005209
Length = 922
Score = 1002 bits (518), Expect = 0.0
Identities = 518/518 (100%)
Strand = Plus / Plus
Query: 5 gaattctcccagacatttagagaagatttaatgccaatacctctgaaattattctacaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcccagacatttagagaagatttaatgccaatacctctgaaattattctacaaa 264
Query: 65 atagaaacaggagtaacattgcccaattcatgctatgaggcccctcaaaccacttgagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atagaaacaggagtaacattgcccaattcatgctatgaggcccctcaaaccacttgagga 324
Query: 125 ttcaacaaagagaattacagaccaatatctcttaaaagtatagacacaaaaatactcaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcaacaaagagaattacagaccaatatctcttaaaagtatagacacaaaaatactcaat 384
Query: 185 gatatacttgcaaatagaatcaaaaacatataaaaaagatcatgatccactctgatgcaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatatacttgcaaatagaatcaaaaacatataaaaaagatcatgatccactctgatgcaa 444
Query: 245 taataacaataaagatagaggtaacacataccaccttcaaccatgttctgatatattcct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taataacaataaagatagaggtaacacataccaccttcaaccatgttctgatatattcct 504
Query: 305 agtttctcacaagcaggatccctgctttatcagtctaatctgtattctgtgctctcattt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtttctcacaagcaggatccctgctttatcagtctaatctgtattctgtgctctcattt 564
Query: 365 caattagacacatcctgtggataatggagatggacgtctacaatcttaccacagtgactc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caattagacacatcctgtggataatggagatggacgtctacaatcttaccacagtgactc 624
Query: 425 agttcatcctcatagggctctctgacctccctgaagtgcgctatccactctttgtggcct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agttcatcctcatagggctctctgacctccctgaagtgcgctatccactctttgtggcct 684
Query: 485 ttgtcatcatctatcagatcactttactgggaaatggg 522
||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttgtcatcatctatcagatcactttactgggaaatggg 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_e10.g1 MSMg01no384_e10.g1 CHROMAT_FILE:
MSMg01no384_e10.g1 PHD_FILE: MSMg01no384_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:32 2005
(657 letters)
>mm_chr7_92450531_92451586
Length = 1056
Score = 236 bits (122), Expect = 4e-66
Identities = 542/728 (74%), Gaps = 115/728 (15%)
Strand = Plus / Plus
Query: 6 tagttaa-cacatattcttcagggcacgggacttcctacagtaatctgagcaag-ctgaa 63
||||||| | ||| |||||||||||| || | || || || |||| ||||| || |||||
Sbjct: 206 tagttaatc-catgttcttcagggcatggcaattactgcaataatttgagc-agactgaa 263
Query: 64 tgtatgttacagagctgttagatgactagaagaaaacatattctt--aaacacaccaggg 121
|||| ||||||||| || |||||||||||||||||||||| |||| || |||||||||
Sbjct: 264 tgtaagttacagaggtggtagatgactagaagaaaacatactcttggaa--acaccaggg 321
Query: 122 aaggtataaaatcccgagggacattata--agtaaaaacaaagccttgcaaatctaagaa 179
|||| |||||| || |||| ||| || || || |||||| |||| |||||||||||
Sbjct: 322 caggtgtaaaat-cctaggg--attttaccaggaagcacaaagacttgaaaatctaagaa 378
Query: 180 agatcacatccaaatgtgaagatgagagctgcct-acaaaattccatcatt-gttat-aa 236
|||||||||||||||||||| | |||||| || | ||| |||| ||| ||| || || ||
Sbjct: 379 agatcacatccaaatgtgaaaaggagagcagc-tcacacaattacattatttgt-attaa 436
Query: 237 gtgagtggaaatttta--------------------------gt--------------cc 256
||| ||||||||||| || ||
Sbjct: 437 -tgaatggaaattttaatccctaggaaaaaaaagagacttttgtatttttaatacagacc 495
Query: 257 acatc-tgaataacatgactgtcattctttgaacaatcacttatcctaaacaaa-tttcc 314
||| | | ||||| |||| |||| ||| | ||| ||||||||||||||||||| ||| |
Sbjct: 496 acaccct-aataatatgattgtctttcatcgaatgatcacttatcctaaacaaaattttc 554
Query: 315 cagcaaaa-agtagatttgatagagg--taaaaat-ta-aggacaccaa-gttctgtgga 368
|||||||| | ||||||| || || |||||| || ||||| |||| ||||||||
Sbjct: 555 cagcaaaata-tagatttcat---ggactaaaaaaatagaggac-ccaaagttctgtgct 609
Query: 369 tgttaaatatgagaatagaaaagagt-aggaaagaatactgttataatcaaaaa-taatg 426
|| ||||| || ||||||||| || | ||| || |||| | | ||||| ||||| || ||
Sbjct: 610 tgataaatgtgggaatagaaa-gaattagggaa-aatattatgataataaaaaaatagtg 667
Query: 427 caaaaacaaagactattaaagaactataaagaaaacgtat--taagttttttaagatata 484
|||||| ||||||||| ||||||||| |||||||| || ||||||||| |||| |||
Sbjct: 668 caaaaataaagactatcaaagaactaaaaagaaaa---atgttaagtttttaaagaaata 724
Query: 485 acactcaggccaatgccatataatatagcaactaaggaaaaaac-------aaaccacaa 537
||| |||||| ||| | ||||||||||||||||| |||||| || ||| | ||
Sbjct: 725 acagtcaggcaaattcaatataatatagcaacta-ggaaaataccaaaaaaaaa--aaaa 781
Query: 538 aaagcaaccaaatgggaaaa---caaatatatttttgacactgtattctaaca--tgatc 592
|||||||| ||| ||||| || ||||||||||| |||||||||||||| ||||
Sbjct: 782 aaagcaacggaataagaaaaaccca--tatatttttgaaactgtattctaacaaatgata 839
Query: 593 ctaataaaaaaaattgattaatgggttatatttc-cagccacatacactgag-t-tttta 649
|| || ||||||| ||| |||| | |||||||||||||| || | |||||
Sbjct: 840 cttattaaaaaaa--gatcaatg----------ctcagccacatacact-aggtctttta 886
Query: 650 actgtctt 657
||||||||
Sbjct: 887 actgtctt 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1056
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1046
Effective search space: 676762
Effective search space used: 676762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
