BAC Information

Click to search

BAC

Clone NameMSMg01-384J13
Chromosome7 (Build37)
Map Location 124,078,203 - 124,078,818
singlet/doubletsinglet
Overlap genenone
Upstream geneSox6, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
Downstream geneXylt1, LOC669758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384J13.T7 (MSMg01no384_j13.b1)MSMg01-384J13.TJ (MSMg01no384_j13.g1)
ACCAG487995AG487996
length740733
length of high quality
(start - end)
592 (34 - 625)617 (65 - 681)
definitionCHROMAT_FILE: MSMg01no384_j13.b1 PHD_FILE: MSMg01no384_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:55 2005CHROMAT_FILE: MSMg01no384_j13.g1 PHD_FILE: MSMg01no384_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCCAGT
TTCCCACCCATTCCTGAGGATTTATAGTTAATGGTTGCTAAGACAAAGAT
GTTCTTCCCTGGTGTAGCCACTGGTAAGTTGCCCATATGCTTTACCTGTC
TTCCTGTAAGTAACTCTAATTAAAACCATGGGGTTGCAAAAAAGACATGA
AAGTTCAAGGAGTACAAACTTGGAAAAAAAAAAGGGATCCACAGGTGTGG
GAGGGGACAAAAGAGGGCAATGGGGGTGTGAACACATTGCATTATATATA
CATGTGAAAGTAATGAGACACATCAATATATATATAGCTGCTATATGTTA
ATAAAAACTAAATATTATTTAAAATAAATGTGGGAGGCTGACAAGATATC
TCTGTGAGTAAAAGCTCATGCTTGCCACATAAGCCTGATGACCTCAACTT
TATCCCTAGAAGCCAGAAAGATGGCCTCTGATATCCATGTGCCTTGGCAT
GCACACTCCCACAGCAAACACATTAAAATAAATTAAATTGAGTTTTTTTT
TTATGAGACCAGTTGGTGAGCATGCACATCCTGTGGTAATCAATTATCTA
TTACACGACATTTCAATCACAACCCAGACAAGGAACCCACCTAGACTATT
CAGAGTGGTCTTTGGAAGAGTAGGTCTTCAGGCCATGATTCCTGTCCTAG
AAGAGATCAGTCCTTTGAATTCAGGTCAGCTAAAGTATAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATGATCATATCAGCCAGGGCGTGTCCAGAAGAAGCT
GGGTCTCAGCAGCACTTCCGGAATTCTGGCTCCTACAATTTCCTACCTCC
CCCCTCCCCCCACCCCGTTTTCCTGTGATGTCCCCTGAGCCTGAGGGGGA
ACAGGTGCGAGAGATATAACAGTTATGGTTGAGCACCCCAGAGGCATTTA
TTATCTGCATCTTGCCCAGTGGGTCTCTACATTAACTGCTGCTCACTGCA
CAAAAAAAAGCTTCAGATAAAGTCTGAGAGCTTCAAAGTGGTTATATCTC
GGAACAGGAATGTGCCTGGAATTTTTATGAGCTGTGGGGCTGACCCCAGT
GGCTGGACAACTTCACATTGCCAAGAGCACCATTCTCTTCATCCCCATCT
TCACTAACCCTTGTTAGACACAGAATTTTAACCTTTAACTCAAATGTATG
TTGTCTTTTGAGACAAAGCCTTGTCTATGTAGTCTAGGGTAGCTTGAAAC
TCATGGTTCCCTCGTCTCTTCATCTTGAGTGTTTGGATTACAGGTGTTCA
CCACTATGCCCTGCTGAGATTACTCATTTTTGATCCTATGTTAGATTACA
GACTACATTAGTCCTACTTCAATTTCCTCACCTCAAACAAGGATTTGTGA
GAATGAGACAGGCATGGTGAGTCACACCTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_j13.g1 MSMg01no384_j13.g1 CHROMAT_FILE:
MSMg01no384_j13.g1 PHD_FILE: MSMg01no384_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:55 2005
         (617 letters)



>mm_chr7_124078002_124079018
          Length = 1017

 Score = 1131 bits (585), Expect = 0.0
 Identities = 609/617 (98%), Gaps = 1/617 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatcatatcagccagggcgtgtccagaagaagctgggtctcagcagcacttccggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atgatcatatcagccagggcgtgtccagaagaagctgggtctcagcagcacttccggaat 261

                                                                       
Query: 61  tctggctcctacaatttcctacctcccccctccccccaccccgttttcctgtgatgtccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tctggctcctacaatttcctacctcccccctccccccaccccgttttcctgtgatgtccc 321

                                                                       
Query: 121 ctgagcctgagggggaacaggtgcgagagatataacagttatggttgagcaccccagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctgagcctgagggggaacaggtgcgagagatataacagttatggttgagcaccccagagg 381

                                                                       
Query: 181 catttattatctgcatcttgcccagtgggtctctacattaactgctgctcactgcacaaa 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 382 catttattatctgcatcttgcccagtgggtctccacattaactgctgctcactgcacaaa 441

                                                                       
Query: 241 aaaaagcttcagataaagtctgagagcttcaaagtggttatatctcggaacaggaatgtg 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaaa-gcttcagataaagtctgagagcttcaaagtggttatatctcggaacaggaatgtg 500

                                                                       
Query: 301 cctggaatttttatgagctgtggggctgaccccagtggctggacaacttcacattgccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctggaatttttatgagctgtggggctgaccccagtggctggacaacttcacattgccaa 560

                                                                       
Query: 361 gagcaccattctcttcatccccatcttcactaacccttgttagacacagaattttaacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagcaccattctcttcatccccatcttcactaacccttgttagacacagaattttaacct 620

                                                                       
Query: 421 ttaactcaaatgtatgttgtcttttgagacaaagccttgtctatgtagtctagggtagct 480
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 621 ttaactcaaatgtatgttgtcttttgagacaaagccttgtctatgtagcccagggtagct 680

                                                                       
Query: 481 tgaaactcatggttccctcgtctcttcatcttgagtgtttggattacaggtgttcaccac 540
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 681 tgaaactcatggttccctcgtctcttcatcttgagtgtttggattacaagcgttcaccac 740

                                                                       
Query: 541 tatgccctgctgagattactcatttttgatcctatgttagattacagactacattagtcc 600
           |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 741 tatgccctgctgaggttactcatttttgatcctatgttagattatagactacattagtcc 800

                            
Query: 601 tacttcaatttcctcac 617
           |||||||||||||||||
Sbjct: 801 tacttcaatttcctcac 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)